Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8171g00003 ATGAGTTTTGGGGGTTTTCTTGAAAACAAATCAGGTAGTGGCGCAGCCAGACACGACCTTTCGGATATTCCTTACAACAACGTTACCACCACCACCCATACCAACACCAACGAAGACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTGGTGACCACCACCACTCCAACCCTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAAACCAATATAGATGGACAAGATGTGAATAGAATGGTCGAAAATAGCTTCGAACCAAACGGTTTGCGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGCGACAACATCGACGGCGCTTCCGGCGATGAACAAGATGCCGCCGACAACCCTCCCAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTCGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTTAGCAAGAGACTGTGCTTGGAAACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACTCAGTTGGAGCGGCACGAGAACACTTTGCTAAGGCAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCTATCAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGCCCTGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCACCTTCGGATTGAGAACGCCCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGATTTGGTGGAATGAGCATAGGCACTACATTGCCTTTGGGACAAGATTTTGGAATGGGAATGTCGATGTCTGTGTCTAACAACCCTTTGGCTATGGTGTCTCCCACTAGTACCCGACCAACTTCTGTTGTGGATGGGTTTGATAGGTCCATGGAAAGGTCCATGTTTCTTGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGTGGGAGGGAAATCATGAACCATGAGGAGTACGCGAGAACCTTCACTCCTTGTATTGGTTTGAGACCAAATGGGTTTGTGTCCGAAGCCTCTAGGGAAAATGGCATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAAATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAGGTGATATCTAACGGGATAAATGGATCAAGAAATGGAGCACTTCAATTAATGCATGCCGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTTCGTGAGGTCAATTTCCTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTCGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCATCCACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCACGCAGAATACGATGAGAGCCAAATTCACCAGGTTTATAGACCATCGTTGAACTCAGGCATGGGGTTCGGTGCTCAGCGTTGGGTGGCTACCCTTCAACGGCAATGCGAGTGTCTTGCGATCTTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCAGCAATAACGGCAGGGGGGAGGCGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGCGCCGGAGTGTGTGCCTCCACGGTGCACAAGTGGAACAAGCTCAACCCCGGGAACGTGGATGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATTGTGCTGAGCGCCGCCACCTCCGTTTGGCTCCCGGTGTCGCCGCAGAGGCTCTTTGACTTCCTTCGGGACGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTCCGAGCCAGTGCCATAAACTCCAGCCAGAGCAGCATGCTGATACTACAGGAGACATGCATAGACGAGGCAGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTCGTCATGAACGGTGGTGATTCAGCTTATGTGGCACTGTTGCCATCGGGATTTGCTATTGTTCCTGATGGGCCCGAGTCTCGTGGGTCACAGAATGGACCTACTGCCGCAACAAACGGTGGTGATAATGGTGTGGCACGCGTGAGTGGGTCCCTTTTAACAGTTGCGTTTCAGATCCTTGTGAATAGTCTTCCTACAGCCAAGCTCACAGTAGAGTCCGTGGAAACCGTGAACAACCTCATATCATGCACCGTTCAAAAAATCAAAGCTGCTCTGCACTGCGAAAGTTAA 2496 0.52 MSFGGFLENKSGSGAARHDLSDIPYNNVTTTTHTNTNEDDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQTNIDGQDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGMSIGTTLPLGQDFGMGMSMSVSNNPLAMVSPTSTRPTSVVDGFDRSMERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREIMNHEEYARTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPSTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSSQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPESRGSQNGPTAATNGGDNGVARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8171g00003 831 Coils Coil 181 213 - -
Vium8171g00003 831 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Vium8171g00003 831 SMART START_1 337 562 IPR002913 GO:0008289
Vium8171g00003 831 CDD START_ArGLABRA2_like 332 561 - -
Vium8171g00003 831 SUPERFAMILY Homeodomain-like 116 187 IPR009057 -
Vium8171g00003 831 SUPERFAMILY Bet v1-like 589 824 - -
Vium8171g00003 831 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 126 828 IPR042160 -
Vium8171g00003 831 MobiDBLite consensus disorder prediction 94 110 - -
Vium8171g00003 831 Gene3D - 116 203 - -
Vium8171g00003 831 MobiDBLite consensus disorder prediction 1 44 - -
Vium8171g00003 831 Pfam Homeodomain 130 185 IPR001356 GO:0003677
Vium8171g00003 831 MobiDBLite consensus disorder prediction 23 42 - -
Vium8171g00003 831 FunFam Homeobox-leucine zipper protein HDG1 117 203 - -
Vium8171g00003 831 Pfam START domain 337 562 IPR002913 GO:0008289
Vium8171g00003 831 SMART HOX_1 128 191 IPR001356 GO:0003677
Vium8171g00003 831 FunFam Homeobox-leucine zipper protein GLABRA 2 337 561 - -
Vium8171g00003 831 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Vium8171g00003 831 ProSiteProfiles START domain profile. 328 565 IPR002913 GO:0008289
Vium8171g00003 831 CDD homeodomain 129 187 IPR001356 GO:0003677
Vium8171g00003 831 MobiDBLite consensus disorder prediction 90 137 - -
Vium8171g00003 831 SUPERFAMILY Bet v1-like 329 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8171g00003 Vium-Chr8171 5071 11813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8171g00003 1 831 Homeobox Transcription Factor Family AT3G61150 65.554 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium8171g00003 START 2.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8171g00003 K09338 - gmx:100811873 1476.84