Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8171g00001 ATGAGTTTTGGGGGTTTTCTTGAAAACAAATCAGGTAGTGGCGCAGCCAGACACGACCTTTCGGATATTCCTTACAACAACGTTACCACCACCACCCATACCAACACCAACGAAGACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGCCTGGTGACCACCACCACTCCAACCCTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAGCAAACCAATATAGATGGACAAGATGTGAATAGAATGGTCGAAAATAGCTTCGAACCAAACGGTTTGCGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGCGACAACATCGACGGCGCTTCCGGCGATGAACAAGATGCCGCCGACAACCCTCCCAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTCGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTTAGCAAGAGACTGTGCTTGGAAACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACTCAGTTGGAGCGGCACGAGAACACTTTGCTAAGGCAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCTATCAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGCCCTGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCACCTTCGGATTGAGAACGCCCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGATTTGGTGGAATGAGCATAGGCACTACATTGCCTTTGGGACAAGATTTTGGAATGGGAATGTCGATGTCTGTGTCTAACAACCCTTTGGCTATGGTGTCTCCCACTAGTACCCGACCAACTTCTGTTGTGGATGGGTTTGATAGGTCCATGGAAAGGTCCATGTTTCTTGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGTGGGAGGGAAATCATGAACCATGAGGAGTACGCGAGAACCTTCACTCCTTGTATTGGTTTGAGACCAAATGGGTTTGTGTCCGAAGCCTCTAGGGAAAATGGCATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAAATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAGGTGATATCTAACGGGATAAATGGATCAAGAAATGGAGCACTTCAATTAATGCATGCCGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTTCGTGAGGTCAATTTCCTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTCGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCACCATCCACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCACGCAGAATACGATGAGAGCCAAATTCACCAGGTTTATAGACCATCGTTGAACTCAGGCATGGGGTTCGGTGCTCAGCGTTGGGTGGCTACCCTTCAACGGCAATGCGAGTGTCTTGCGATCTTAATGTCCTCAGCAGCACCCTCTCGAGACCATTCAGCAATAACGGCAGGGGGGAGGCGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGCGCCGGAGTGTGTGCCTCCACGGTGCACAAGTGGAACAAGCTCAACCCCGGGAACGTGGATGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATTGTGCTGAGCGCCGCCACCTCCGTTTGGCTCCCGGTGTCGCCGCAGAGGCTCTTTGACTTCCTTCGGGACGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTCCGAGCCAGTGCCATAAACTCCAGCCAGAGCAGCATGCTGATACTACAGGAGACATGCATAGACGAGGCAGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTCGTCATGAACGGTGGTGATTCAGCTTATGTGGCACTGTTGCCATCGGGATTTGCTATTGTTCCTGATGGGCCCGAGTCTCGTGGGTCACAGAATGGACCTACTGCCGCAACAAACGGTGGTGATAATGGTGTGGCACGCGTGAGTGGGTCCCTTTTAACAGTTGCGTTTCAGATCCTTGTGAATAGTCTTCCTACAGCCAAGCTCACAGTAGAGTCCGTGGAAACCGTGAACAACCTCATATCATGCACCGTTCAAAAAATCAAAGCTGCTCTGCACTGCGAAAGTTAA 2499 0.5202 MSFGGFLENKSGSGAARHDLSDIPYNNVTTTTHTNTNEDDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQQTNIDGQDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGMSIGTTLPLGQDFGMGMSMSVSNNPLAMVSPTSTRPTSVVDGFDRSMERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREIMNHEEYARTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPSTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSSQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPESRGSQNGPTAATNGGDNGVARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8171g00001 832 SMART START_1 338 563 IPR002913 GO:0008289
Vium8171g00001 832 MobiDBLite consensus disorder prediction 91 138 - -
Vium8171g00001 832 Pfam START domain 338 563 IPR002913 GO:0008289
Vium8171g00001 832 Pfam Homeodomain 131 186 IPR001356 GO:0003677
Vium8171g00001 832 Gene3D - 117 204 - -
Vium8171g00001 832 Coils Coil 182 214 - -
Vium8171g00001 832 FunFam Homeobox-leucine zipper protein HDG1 118 204 - -
Vium8171g00001 832 MobiDBLite consensus disorder prediction 1 44 - -
Vium8171g00001 832 FunFam Homeobox-leucine zipper protein GLABRA 2 338 562 - -
Vium8171g00001 832 MobiDBLite consensus disorder prediction 95 111 - -
Vium8171g00001 832 CDD homeodomain 130 188 IPR001356 GO:0003677
Vium8171g00001 832 ProSiteProfiles START domain profile. 329 566 IPR002913 GO:0008289
Vium8171g00001 832 MobiDBLite consensus disorder prediction 23 42 - -
Vium8171g00001 832 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Vium8171g00001 832 SMART HOX_1 129 192 IPR001356 GO:0003677
Vium8171g00001 832 SUPERFAMILY Bet v1-like 590 825 - -
Vium8171g00001 832 SUPERFAMILY Homeodomain-like 117 188 IPR009057 -
Vium8171g00001 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 127 829 IPR042160 -
Vium8171g00001 832 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Vium8171g00001 832 CDD START_ArGLABRA2_like 333 562 - -
Vium8171g00001 832 SUPERFAMILY Bet v1-like 330 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8171g00001 Vium-Chr8171 5071 11815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8171g00001 1 832 Homeobox Transcription Factor Family AT3G61150 65.476 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium8171g00001 START 2.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8171g00001 K09338 - gmx:100811873 1483.39