Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8159g00002 ATGGGGAGTCGCTCTGCAATGAGAAGAGAACCAAGTAGAACTCATTCAGTTTCTCGGTGGAGTCCTACAAGAGAGCAAATAGCAATGTTGGAGGACCTTTACAGACAGGGAATGAGAACTCCAAATGCTGAACAGATACAAGAGGTTACCTCCAGATTAAGGGCTTATGGTCACATCCAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAAGCCTTGCATGTTCCAATAGCTTTCTTCAAGCCTCACATCCTATTTGCCAAAATGTTGTCTGTGCCCCATTTTATCCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAGAAAAGGTTGTTGCAACTGGAGGTATTGTTGGGACAGTTGTACCATTTGGGATGCTAAAAATTTGTGATGGCCAGCAGATATACCAACAATTGCGACAGAGGGTACAACCTGATTATAACTATAGCATCAATGACAAAAAAACTTTAAACCTCTTTCCTCTTCATCCAACAGGCATTTTGAAAGGAAAAACTGTTAATCAAGGGTCTTCACACGCTTCAGCTTCTGGTTGTCACTGA 594 0.4125 MGSRSAMRREPSRTHSVSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQKLESLACSNSFLQASHPICQNVVCAPFYPQQSGMNFYPQPEKVVATGGIVGTVVPFGMLKICDGQQIYQQLRQRVQPDYNYSINDKKTLNLFPLHPTGILKGKTVNQGSSHASASGCH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8159g00002 197 MobiDBLite consensus disorder prediction 1 21 - -
Vium8159g00002 197 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vium8159g00002 197 CDD homeodomain 19 79 IPR001356 GO:0003677
Vium8159g00002 197 SMART HOX_1 15 82 IPR001356 GO:0003677
Vium8159g00002 197 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 191 IPR044555 GO:0003700|GO:0099402
Vium8159g00002 197 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Vium8159g00002 197 Gene3D - 18 83 - -
Vium8159g00002 197 FunFam WUSCHEL-related homeobox 4 17 84 - -
Vium8159g00002 197 SUPERFAMILY Homeodomain-like 12 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8159g00002 Vium-Chr8159 7643 8662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8159g00002 14 175 Wox Gene Family AT5G59340 41.624 1.44e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium8159g00002 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8159g00002 - - vum:124846494 259.61