Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8159g00001 ATGGGGAGTCGCTCTGCAATGAGAAGAGAACCAAGTAGAACTCATTCAGTTTCTCGGTGGAGTCCTACAAGAGAGCAAATAGCAATGTTGGAGGACCTTTACAGACAGGGAATGAGAACTCCAAATGCTGAACAGATACAAGAGGTTACCTCCAGATTAAGGGCTTATGGTCACATCCAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAAGCCTTGCATGTTCCAATAGCTTTCTTCAAGCCTCACATCCTATTTGCCAAAATGTTGTCTGTGCCCCATTTTATCCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAGAAAAGGTTGTTGCAACTGGAG 379 0.4248 MGSRSAMRREPSRTHSVSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQKLESLACSNSFLQASHPICQNVVCAPFYPQQSGMNFYPQPEKVVATG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8159g00001 126 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 120 IPR044555 GO:0003700|GO:0099402
Vium8159g00001 126 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vium8159g00001 126 SUPERFAMILY Homeodomain-like 12 84 IPR009057 -
Vium8159g00001 126 CDD homeodomain 19 79 IPR001356 GO:0003677
Vium8159g00001 126 SMART HOX_1 15 82 IPR001356 GO:0003677
Vium8159g00001 126 MobiDBLite consensus disorder prediction 1 22 - -
Vium8159g00001 126 FunFam WUSCHEL-related homeobox 4 17 84 - -
Vium8159g00001 126 Gene3D - 18 83 - -
Vium8159g00001 126 Pfam Homeodomain 18 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8159g00001 Vium-Chr8159 2735 3539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8159g00001 14 111 Wox Gene Family AT5G59340 60.577 1.26e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium8159g00001 Homeodomain 4.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8159g00001 - - vum:124846494 263.462