Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00051 ATGCAATCTATCAGGAAGTCCTTCAAATCTTATGGTTCCTTCAAACAAACAAAAAGGTTTTCCGGCGCCGGAAACCCCGATTCCGACCACGAGCAGCTCCCCATTCTCCTCGACCAAGAAACGCACCGCCACAGCGCAATGCCAGCCGGCGACTACGTCGTCAAAATCGACGATGCCGCCAATCCTTCCCAGGCCAACAAGATTTGGCGCGAGTCGAGCTACGACTCGTGGAGGGGCGAAGGCTCGTCCTCCGCCGCCAGTGACCAGAGTTTTAATTTCCGGCAGACGGAGGACCCGCCGTCGCAGCTGATAGGGCGTTTCCTCCACAAGCAGCGGGCCTCCGGCGAGATGCAGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGGACGATGCCGGCGAAGGAAGGTTGACGCCGGTGGAGGAGTCTCCGGTGAACTATCGCAATTCCAGGGAGCTGAAGGTCTCCTTCGATGAACCCCTTTCCGATTCGAATCTCCTCGAACAGCAGAACGACCCCTTCAGAAGAAGGCCCAGCAAGGAATCGTCGACGATCGCGGACTTCCAACGCCCTCCGCACCCGCCGCAGTACGACCATCGTCGCTCGCCTTCGCCGTCGCCTATTGACGACGGCGAGGTACTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTCTCCATGCAGAGGAAATCTGCGTTGTTGAAGGCCAAAACGAGATCCAGGTTGCTGGCCCCGCCAGACGAATCCGAGAGAAAATCGAGTCGGGTTATGAAATCGGGTCAGCTCCAGTCTGGGTTTTTAGGGAGGAAGGGTGATGAGGAGGAGGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGAAGACTCATTTCAGCTTCTGGATTCTTCTGGAGTGGGTGAGTTTGATTTTGATCATTGGGTTTTTGATAACCACCCTATGCATTCCCTTTCTGAGGGAGATGAATTTGTGGCATCTTAAATTGTGGAAATGGGAGGTTATGGTTCTGGTTTTGATATGTGGGAGATTGGTGTCTGATTGGGTTATTAGGATTGCCGTATTCTGCATTGAGAGGAACTTCCTCTTGAGGAAGAGGGTGTTGTATTTTGTGTACGGTGTGAAGAAAGCTGTTCAGAATTGTGTTTGGTTGGGGCTCGTGTTGATTGCATGGCATTTATTGTTTGACCAGAGGGTGCAGAGGGAGACCAACAGTAATTTCTTGGAGTATGTTAACAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTATGGTTGCTGAAGACTCTAATGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGCACGTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTATGTAATTGAGACGCTTTCGGGGCCTCCATTGGTGGAGATTCAGAAGGCTGAAGAGGAGGAGGAGAAGCTTGCTGATGAGGTCCAGCAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAAGGCAACTGCTTTTTCTGATATCAAGAGTGGCAGGTCCAGGAGTGGAGTGCTCAAGAGCCCCAGAGCTAAGAGCGCCAAGTTTTCGCGCCCTCTTTCCAAGGGCTCTGACGATGGTAATGTCATCACCATTGATAACCTCAACAAACTCAACCCCAACAATATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGCATGGGGCTCTTAGCACCTTGGATGAACAGATACTTGATACCGCCAATGAAGATGAGAACGCCACGCAGATCAGAAGTGAAAACGAGGCAAAATCTGCTGCTAAGAAAATATTTCAAAATGTTGCTAGGCGTGGGTGCAGGTATATATACCCGGATGACTTGATGCGATTTATGCAAGAAGACGAAGCTGCAAAAACCATGAATCTCTTCGAAGGAGCATCTGATTCTGGGAGAATAAGCAAAGCTGCTTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCGCTCGCTTTGACACTAAATGACACAAAAACGGCAGTGAACAAACTTCATCGAATGCTGAATTTTATAGTTGGAATTGTTGTACTGATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTTTGAGTTCACAGATTGTCTTGGTTACATTTATATTTGGAAACACCTGCAAGACCATATTTGAGGCAATTGTTTTCCTATTTGTCATGCACCCATTTGACGTGGGAGATAGATGTGAAATCGATGGGATTCAGATGATCGTAGAAGAAATGAACATATTGACAACTATATTTCTGAAATACGATAATCATAAGGTGATCATCCCTAACAGTGTCCTTGCTACCAAGGCTATATTTAACTTTTACCGGAGTCCTGACATGCAAGATATTATCGAATTCTACATACATGTATGCACCCCAGTTGAAAAGATTTCACTTATAAAACACAGAATAAACAGTTTCTGTGAAAGCAAGAAGGAGCACTGGTATCCTTCACCTACTGTAGTAGTCAGGGATCATATAGACATACACATGGTGAAAATGGCTATCTGGCCCAGTCATAGAATGAACTTCCAAGATCAGACAGAAAGGCATACCAGGAGATCCATTTTGCTTGAAGAGTTGATTAAGATTTTCAGGGAACTCGACCTTAATTATCGCCTCTTGCCGCTGGACGTTAACGTCAGAGCCGTGCCTACCTCCTCTGAACGGCTTCCACCTAGTTGGCAATCGATTCCAAGTTGA 2748 0.4753 MQSIRKSFKSYGSFKQTKRFSGAGNPDSDHEQLPILLDQETHRHSAMPAGDYVVKIDDAANPSQANKIWRESSYDSWRGEGSSSAASDQSFNFRQTEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQDDAGEGRLTPVEESPVNYRNSRELKVSFDEPLSDSNLLEQQNDPFRRRPSKESSTIADFQRPPHPPQYDHRRSPSPSPIDDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLAPPDESERKSSRVMKSGQLQSGFLGRKGDEEEDDPFLEEDLPDEFKKTHFSFWILLEWVSLILIIGFLITTLCIPFLREMNLWHLKLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDQRVQRETNSNFLEYVNKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIQKAEEEEEKLADEVQQLQNAGVTIPPDLKATAFSDIKSGRSRSGVLKSPRAKSAKFSRPLSKGSDDGNVITIDNLNKLNPNNISAWNMKRLMNMVRHGALSTLDEQILDTANEDENATQIRSENEAKSAAKKIFQNVARRGCRYIYPDDLMRFMQEDEAAKTMNLFEGASDSGRISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVGIVVLIIWLLILELATTKFLVFLSSQIVLVTFIFGNTCKTIFEAIVFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTIFLKYDNHKVIIPNSVLATKAIFNFYRSPDMQDIIEFYIHVCTPVEKISLIKHRINSFCESKKEHWYPSPTVVVRDHIDIHMVKMAIWPSHRMNFQDQTERHTRRSILLEELIKIFRELDLNYRLLPLDVNVRAVPTSSERLPPSWQSIPS 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00051 915 MobiDBLite consensus disorder prediction 511 533 - -
Vium8158g00051 915 MobiDBLite consensus disorder prediction 130 149 - -
Vium8158g00051 915 MobiDBLite consensus disorder prediction 160 213 - -
Vium8158g00051 915 MobiDBLite consensus disorder prediction 64 102 - -
Vium8158g00051 915 Pfam Mechanosensitive ion channel 682 838 IPR006685 GO:0016020|GO:0055085
Vium8158g00051 915 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 106 910 IPR016688 -
Vium8158g00051 915 MobiDBLite consensus disorder prediction 65 99 - -
Vium8158g00051 915 Coils Coil 468 494 - -
Vium8158g00051 915 PIRSF Memb_At2g17000 38 915 IPR016688 -
Vium8158g00051 915 SUPERFAMILY Sm-like ribonucleoproteins 730 789 IPR010920 -
Vium8158g00051 915 Gene3D - 740 789 IPR023408 -
Vium8158g00051 915 FunFam Predicted mechanosensitive ion channel 740 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00051 Vium-Chr8158 249112 253343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00051 51 915 Mechanosensitive Ion Channel Family AT1G78610 55.203 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00051 K22048 - gmx:100789882 1462.59