Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00048 ATGGCCATGATGGTGACGGAGGGCAACGACAGCTGCGGCAGCGGAGTGCAGCACTATAGCAATTCCTCCTCCTCCTCGCCGGCGCAAACTCGTCAGCAGCGCCACAAGGTCGAAGTATACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCCACGAAGATGCTATGCAACCTGGCTTCAACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCCACACGGTACGCGCTGGATGTGAATGTGGAAAGGGCGGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTAGATTAGTTCAGGTTCATCCCATATCTGATGGAAACTCAGCTGATGCTTCTGAATTGGATGATCCTGGGACAGAATCTGGTCAAAGTTCTTCAAAGTACTCTAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCATTGGCTCTTGAAGCAAATAGTTCTGAAGACATAGAGGAGGAACAATCTGTACATGCCAATGTTCAATATTCACGACCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACACGCCTTTTCTACAACTGATGGTTACTCATTAGATGTATTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAATCTGAAAGCAGCTTTAGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGGTTCAGTCCGCAATCTGTATCTTCTGTTGATGAGCCTGATCAACCAAAGATGAAAACTGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATACTGTAGCCAGGAAGTAGCGATCAAAGTTCTCAAGCCTGAGCATGTAAATTCAGAATTGCAGAAAGAGTTTGCACAAGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGTTTATGCATAGTGACAGAATTTATGTCAGGTGGAAGTGTGTATGACTACCTACATAAGCAGAGGGGCTTTTTTAAATTTCCTACCCTGCTTAAAGTCGCAATTGATATTTCTAAAGGGATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGACGAAAATTGTGTTGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAGTCTGGTGTTATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTTCAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTGCGACCCACCATCCCCAAGAACACTCATCCAAAATTTGTTGAACTTCTTGAGAGATCCTGGCAGCAAGATCCAACATTGAGACCCGATTTCTCTGAAATTATCGACATCCTGCAGCAATTGGCGAAGGAGGTATAA 1683 0.4326 MAMMVTEGNDSCGSGVQHYSNSSSSSPAQTRQQRHKVEVYNEILRRLKDSGHEDAMQPGFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIEVRLVQVHPISDGNSADASELDDPGTESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANSSEDIEEEQSVHANVQYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETENLKAALEREVLKKIERQVRFSPQSVSSVDEPDQPKMKTELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQKEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQRGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIDILQQLAKEV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00048 560 ProSiteProfiles ACT domain profile. 190 267 IPR002912 -
Vium8158g00048 560 Coils Coil 240 260 - -
Vium8158g00048 560 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8158g00048 560 CDD ACT_TyrKc 188 255 - -
Vium8158g00048 560 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 MobiDBLite consensus disorder prediction 130 152 - -
Vium8158g00048 560 MobiDBLite consensus disorder prediction 118 157 - -
Vium8158g00048 560 Pfam Protein tyrosine and serine/threonine kinase 304 552 IPR001245 GO:0004672|GO:0006468
Vium8158g00048 560 Gene3D - 187 261 - -
Vium8158g00048 560 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8158g00048 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vium8158g00048 560 CDD STKc_MAP3K-like 310 553 - -
Vium8158g00048 560 MobiDBLite consensus disorder prediction 10 34 - -
Vium8158g00048 560 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Vium8158g00048 560 SUPERFAMILY Protein kinase-like (PK-like) 288 553 IPR011009 -
Vium8158g00048 560 Gene3D Transferase(Phosphotransferase) domain 1 383 560 - -
Vium8158g00048 560 FunFam Serine/threonine-protein kinase isoform 1 294 382 - -
Vium8158g00048 560 SUPERFAMILY ACT-like 188 254 IPR045865 -
Vium8158g00048 560 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 31 556 - -
Vium8158g00048 560 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00048 Vium-Chr8158 230778 240025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00048 4 514 MAP Kinase Kinase Kinase AT4G38470 72.904 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium8158g00048 PK_Tyr_Ser-Thr 5.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00048 - - gmx:100805180 1043.49