Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00047 ATGGCCATGATGGTGACGGAGGGCAACGACAGCTGCGGCAGCGGAGTGCAGCACTATAGCAATTCCTCCTCCTCCTCGCCGGCGCAAACTCGTCAGCAGCGCCACAAGGTCGAAGTATACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCCACGAAGATGCTATGCAACCTGGCTTCAACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCCACACGGTACGCGCTGGATGTGAATGTGGAAAGGGCGGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTAGATTAGTTCAGGTTCATCCCATATCTGATGGAAACTCAGCTGATGCTTCTGAATTGGATGATCCTGGGACAGAATCTGGTCAAAGTTCTTCAAAGTACTCTAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCATTGGCTCTTGAAGCAAATAGTTCTGAAGACATAGAGGAGGAACAATCTGTACATGCCAATGTTCAATATTCACGACCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACACGCCTTTTCTACAACTGATGGTTACTCATTAGATGTATTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAATCTGAAAGCAGCTTTAGAAAGAGAAGTCTTGAAGAAGATTGAGGTGAGGTTCAGTCCGCAATCTGTATCTTCTGTTGATGAGCCTGATCAACCAAAGATGAAAACTGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATACTGTAGCCAGGAAGTAGCGATCAAAGTTCTCAAGCCTGAGCATGTAAATTCAGAATTGCAGAAAGAGTTTGCACAAGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGTTTATGCATAGTGACAGAATTTATGTCAGGTGGAAGTGTGTATGACTACCTACATAAGCAGAGGGGCTTTTTTAAATTTCCTACCCTGCTTAAAGTCGCAATTGATATTTCTAAAGGGATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGACGAAAATTGTGTTGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAGTCTGGTGTTATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTTCAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTGCGACCCACCATCCCCAAGAACACTCATCCAAAATTTGTTGAACTTCTTGAGAGATCCTGGCAGCAAGATCCAACATTGAGACCCGATTTCTCTGAAATTATCGACATCCTGCAGCAATTGGCGAAGGAGGTTGGAGATGGAGAGGAGCGGCACAAAGAAAAATCTGGAGGACTTCTGTCAGTCCTGAGACGAGGACATCACTAA 1746 0.4359 MAMMVTEGNDSCGSGVQHYSNSSSSSPAQTRQQRHKVEVYNEILRRLKDSGHEDAMQPGFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIEVRLVQVHPISDGNSADASELDDPGTESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANSSEDIEEEQSVHANVQYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETENLKAALEREVLKKIEVRFSPQSVSSVDEPDQPKMKTELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQKEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQRGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIDILQQLAKEVGDGEERHKEKSGGLLSVLRRGHH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00047 581 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 31 557 - -
Vium8158g00047 581 CDD STKc_MAP3K-like 308 551 - -
Vium8158g00047 581 FunFam Serine/threonine-protein kinase isoform 1 292 380 - -
Vium8158g00047 581 Coils Coil 240 260 - -
Vium8158g00047 581 ProSiteProfiles ACT domain profile. 190 265 IPR002912 -
Vium8158g00047 581 CDD ACT_TyrKc 188 255 - -
Vium8158g00047 581 Pfam Protein tyrosine and serine/threonine kinase 302 550 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 ProSiteProfiles Protein kinase domain profile. 302 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8158g00047 581 Gene3D - 187 259 - -
Vium8158g00047 581 SUPERFAMILY Protein kinase-like (PK-like) 286 551 IPR011009 -
Vium8158g00047 581 MobiDBLite consensus disorder prediction 130 152 - -
Vium8158g00047 581 SUPERFAMILY ACT-like 188 252 IPR045865 -
Vium8158g00047 581 MobiDBLite consensus disorder prediction 118 157 - -
Vium8158g00047 581 Gene3D Transferase(Phosphotransferase) domain 1 381 572 - -
Vium8158g00047 581 MobiDBLite consensus disorder prediction 559 581 - -
Vium8158g00047 581 FunFam serine/threonine-protein kinase HT1 381 571 - -
Vium8158g00047 581 Gene3D Phosphorylase Kinase; domain 1 292 380 - -
Vium8158g00047 581 MobiDBLite consensus disorder prediction 10 34 - -
Vium8158g00047 581 SMART serkin_6 302 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8158g00047 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Vium8158g00047 581 PRINTS Tyrosine kinase catalytic domain signature 413 431 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 PRINTS Tyrosine kinase catalytic domain signature 478 500 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 PRINTS Tyrosine kinase catalytic domain signature 522 544 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 PRINTS Tyrosine kinase catalytic domain signature 459 469 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 PRINTS Tyrosine kinase catalytic domain signature 376 389 IPR001245 GO:0004672|GO:0006468
Vium8158g00047 581 MobiDBLite consensus disorder prediction 1 35 - -
Vium8158g00047 581 MobiDBLite consensus disorder prediction 559 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00047 Vium-Chr8158 230778 242507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00047 7 580 MAP Kinase Kinase Kinase AT4G35780 64.808 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium8158g00047 PK_Tyr_Ser-Thr 6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00047 - - gmx:100805180 1081.24