Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00043 ATGTCAGAGGGCAGTTTGTCCGAGAAGAACAGCGCTCAAGACGAAAACCATGGTGAAAATGGTGGGGTTGGAGTCTCTACCTCTGTTCAAGGTGTGAAAAAAAAGCGTGGCAGAAAGAGTAAAGAGGAAAAGGAGGAGATGGAAAGGAAGTTGTTGGAGGAAAATTTGTTGGAGAAAAATGGTGAAAATAACAGGGTAATATATTCTTCTTTTAAAGATGTGCAAAAGGAAACGGTAGACATGGACAGGAAGAATTCAGAGGGCAATTTGTTGGAGACGAAGGGTGATCGAGATGTTAGCCACGGTGAAAGGGATGGGGTAGGTGGTTCTCTTCAAGAAGGCGTGACAGATGGGAGTAATGGCGACCTTCATGAGAAGAGACCTAGGAGGAAAAGAAAAGTTGTTAAGGAAGGTGGCGGTAAGTTTGAAGGGCCTGACGGGTTTTCGGGAAGTGGAAGTGACATTCAGAAAAAACACAATTTTAGAAACCGTAAAGTCAAAATAGAAGCTGTGATGCCGAAAAAGAAAAAGGGGGATAAGGAGTCTAAGGAAAATCAATCCAATATGTGCCATCAATGCCAGAGAAATGATAAAGGCAGGGTTGTGAGATGCACAGAATGCAAAACCAAAAGATTTTGCATACCCTGTATTGAAAATTGGTATCCTCATTTGAAAGAGGATTACATTGAAGAGGCATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCCGATGCATTTATTAAAAAAATGAAGGCAAAAACAAGTTCCGTTAAAGATGAGAAGGTTGAGGTCTCCATGTGTTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAGCAAATGTTTGAGAATGAGATAGAAGCTAAGATACATGGAATCTCAGTCTCAGAGCTTGAAGTAGTACACGCAGATTATTTTAAGGATGAACGTGTATATTGTGACAATTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAGAATGCTCTTTTGATCTTTGTCTCATGTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTGGGGGGTGCAGATCCAATTACGTTGGAGTTTCCGTTCAGAGGTCGTGATTACTTGCATGGAAAAATTGTAGATAAAACGGTAAACCTAACTGAACCAAATGATGCTGCTAAGCCTCTAATTCGCGACTGGTCTAGAGCTGTATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAACCATGGTTTTCTTGAACTTAAAAGTGTGTTAGGTCAAAATTTTATTACTAATTTATTGTGTAAAGCAAATGGACTGGCACAAACATTGAAGCATGAGACCCCTGACAAATTGTGTTTGTGTTCAAGGCCTGATACTAGCGCAAATTATGGTATGAGGAAGGCTGCATCCCGTGCAGATTCTGGTGACAATTATTTGTACTGTCCTAACTCTGTACAACTACAGGATGAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGCGAGCCTGTCATTGTTAGCCATGTGATTGATTGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGAATAATACCAAACATGAGCAACATTTAGATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAACATCCACCAATTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCTTCATTGGCCTCGGATATTGAAGTTAAAAGACTGGCCGCCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTGTGCTGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCTCTTGGTGGTTGTCTTAACATAGCTGTTAAATTGCCTAAAGAGTGTCTAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCCCAGGAGCTTGGACGCGGGGACTCAGTGACTAAGCTCCACTGTGACATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAACTCAAATTGGATCCCGAGCATCTTAGTGCCATTGACAAGTTGAAACTACAGCACTTTGAGCAAGACAAGAGGGAGCTGCTTAGTGACCGCGATGGAGAAACTAATGTTGACGAAGTAAAATCGGTGCCTGAAAGTGATTCATCCTTTGCAGGGGATGGTTCGGAAGGTGCTCTGTGGGATATCTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTACCTGAGGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCAGTCCTTTAGAGCAGGTTATTCACCCGATCCATGAACAGACATTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCAGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGATTAACAGAGGAATTTCGTACACTTCCCATAAGCCATGTGTCTGCTGAGGATAAATTGGAGCAGGTGAAAAAGATGATAATATATGCTATGCAAGATGTGGTAACAAAATTGGAGACTGCAAGGATGAAAGTAAATATTCCCTTAACAGACAACTAG 2676 0.4189 MSEGSLSEKNSAQDENHGENGGVGVSTSVQGVKKKRGRKSKEEKEEMERKLLEENLLEKNGENNRVIYSSFKDVQKETVDMDRKNSEGNLLETKGDRDVSHGERDGVGGSLQEGVTDGSNGDLHEKRPRRKRKVVKEGGGKFEGPDGFSGSGSDIQKKHNFRNRKVKIEAVMPKKKKGDKESKENQSNMCHQCQRNDKGRVVRCTECKTKRFCIPCIENWYPHLKEDYIEEACPVCRGNCNCKACLRSDAFIKKMKAKTSSVKDEKVEVSMCLLQVLLPYLRLLDEEQMFENEIEAKIHGISVSELEVVHADYFKDERVYCDNCKTSIFDYHRSCTECSFDLCLMCCRELRSGQLVGGADPITLEFPFRGRDYLHGKIVDKTVNLTEPNDAAKPLIRDWSRAVWHAESNGSIPCPKECNHGFLELKSVLGQNFITNLLCKANGLAQTLKHETPDKLCLCSRPDTSANYGMRKAASRADSGDNYLYCPNSVQLQDEDLGHFQWHWEKGEPVIVSHVIDCTSGLSWEPLVMWRAFRQMNNTKHEQHLDVKAIDCLDFCEVEINIHQFFTGYTKAFGDWLHWPRILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGCLNIAVKLPKECLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAELKLDPEHLSAIDKLKLQHFEQDKRELLSDRDGETNVDEVKSVPESDSSFAGDGSEGALWDIFRRQDVPKLQEYLRKHFREFRHIHCSPLEQVIHPIHEQTFYLTVEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPISHVSAEDKLEQVKKMIIYAMQDVVTKLETARMKVNIPLTDN 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00043 891 Coils Coil 40 62 - -
Vium8158g00043 891 ProSiteProfiles Zinc finger RING-type profile. 190 237 IPR001841 -
Vium8158g00043 891 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 13 882 IPR045109 GO:0032454|GO:0033169
Vium8158g00043 891 SMART cupin_9 598 846 IPR003347 -
Vium8158g00043 891 FunFam Transcription factor jumonji domain-containing protein 481 855 - -
Vium8158g00043 891 Pfam JmjC domain, hydroxylase 733 829 IPR003347 -
Vium8158g00043 891 MobiDBLite consensus disorder prediction 75 104 - -
Vium8158g00043 891 MobiDBLite consensus disorder prediction 165 186 - -
Vium8158g00043 891 MobiDBLite consensus disorder prediction 703 727 - -
Vium8158g00043 891 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 184 251 IPR018866 -
Vium8158g00043 891 MobiDBLite consensus disorder prediction 36 60 - -
Vium8158g00043 891 Gene3D Cupin 483 854 - -
Vium8158g00043 891 ProSiteProfiles JmjC domain profile. 617 846 IPR003347 -
Vium8158g00043 891 MobiDBLite consensus disorder prediction 1 190 - -
Vium8158g00043 891 SUPERFAMILY Clavaminate synthase-like 497 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00043 Vium-Chr8158 198704 207666 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium8158g00043 JmjC 3.8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00043 K15601 - gmx:112997634 910.598