Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00042 ATGGCGGGCAAAGGGAAAAGGCGACGAGGAAATACAGTCACCATTCCGGTCGATTCAAACCCCACCCAGCAAAATATTCAATCTTTGGATTTTAATGCCGAGTGTGAGGCTGATCAGAGGAAAGCAATCAACTTTACTGAAACAGTTGATGATGGTGTGAAAAGAAAACGTGGCAGAAGAAGTGAAAAGAAGCGCAAGACAACGATGTCCAAGGGCAAAAGAGAAAAAAGGAAAAGGAGGAGATGGAAAGGAAGTTGTTGGGGGAAANCTTTTTTCCAATTATCCTGGTATATTTTATTTATTAACTTAACACTCTCTTGCAGTGACAATTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAGAATGCTCTTTTGATCTTTGTCTCATGTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTGGGGGGTGCAGATCCAATTACGTTGGAGTTTCCGTTCAGAGGTCGTGATTACTTGCATGGAAAAATTGTAGATAAAACGGTAAACCTAACTGAACCAAATGATGCTGCTAAGCCTCTAATTCGCGACTGGTCTAGAGCTGTATGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAACCATGGTTTTCTTGAACTTAAAAGTGTGTTAGGTCAAAATTTTATTACTAATTTATTGTGTAAAGCAAATGGACTGGCACAAACATTGAAGCATGAGACCCCTGACAAATTGTGTTTGTGTTCAAGGCCTGATACTAGCGCAAATTATGGTATGAGGAAGGCTGCATCCCGTGCAGATTCTGGTGACAATTATTTGTACTGTCCTAACTCTGTACAACTACAGGATGAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGCGAGCCTGTCATTGTTAGCCATGTGATTGATTGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGAATAATACCAAACATGAGCAACATTTAGATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAACATCCACCAATTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCTTCATTGGCCTCGGATATTGAAGTTAAAAGACTGGCCGCCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTGTGCTGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCTCTTGGTGGTTGTCTTAACATAGCTGTTAAATTGCCTAAAGAGTGTCTAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCCCAGGAGCTTGGACGCGGGGACTCAGTGACTAAGCTCCACTGTGACATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAACTCAAATTGGATCCCGAGCATCTTAGTGCCATTGACAAGTTGAAACTACAGCACTTTGAGCAAGACAAGAGGGAGCTGCTTAGTGACCGCGATGGAGAAACTAATGTTGACGAAGTAAAATCGGTGCCTGAAAGTGATTCATCCTTTGCAGGGGATGGTTCGGAAGGTGCTCTGTGGGATATCTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTACCTGAGGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCAGTCCTTTAGAGCAGGTTATTCACCCGATCCATGATCAGACATTCTATTTGACCGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGATTAACAGAGGAATTTCGTACACTTCCCATAAGCCATGTGTCTGCTGAGGATAAATTGGAGGTGAAAAAGATGATAATATATGCTATGCAAGATGTGGTAACAAAATTGGAGACTGCAAGGATGAAAGTAAATATTCCCTTAACAGACAACTAG 2034 0.4199 MAGKGKRRRGNTVTIPVDSNPTQQNIQSLDFNAECEADQRKAINFTETVDDGVKRKRGRRSEKKRKTTMSKGKREKRKRRRWKGSCWGKXFFQLSWYILFINLTLSCSDNCKTSIFDYHRSCTECSFDLCLMCCRELRSGQLVGGADPITLEFPFRGRDYLHGKIVDKTVNLTEPNDAAKPLIRDWSRAVWHAESNGSIPCPKECNHGFLELKSVLGQNFITNLLCKANGLAQTLKHETPDKLCLCSRPDTSANYGMRKAASRADSGDNYLYCPNSVQLQDEDLGHFQWHWEKGEPVIVSHVIDCTSGLSWEPLVMWRAFRQMNNTKHEQHLDVKAIDCLDFCEVEINIHQFFTGYTKAFGDWLHWPRILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGCLNIAVKLPKECLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAELKLDPEHLSAIDKLKLQHFEQDKRELLSDRDGETNVDEVKSVPESDSSFAGDGSEGALWDIFRRQDVPKLQEYLRKHFREFRHIHCSPLEQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPISHVSAEDKLEVKKMIIYAMQDVVTKLETARMKVNIPLTDN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00042 677 Gene3D Cupin 270 641 - -
Vium8158g00042 677 MobiDBLite consensus disorder prediction 48 75 - -
Vium8158g00042 677 MobiDBLite consensus disorder prediction 58 75 - -
Vium8158g00042 677 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 107 668 IPR045109 GO:0032454|GO:0033169
Vium8158g00042 677 ProSiteProfiles JmjC domain profile. 404 633 IPR003347 -
Vium8158g00042 677 SMART cupin_9 385 633 IPR003347 -
Vium8158g00042 677 SUPERFAMILY Clavaminate synthase-like 284 658 - -
Vium8158g00042 677 MobiDBLite consensus disorder prediction 1 24 - -
Vium8158g00042 677 FunFam Transcription factor jumonji domain-containing protein 268 642 - -
Vium8158g00042 677 Pfam JmjC domain, hydroxylase 520 616 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00042 Vium-Chr8158 190392 196927 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium8158g00042 JmjC 2.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00042 K15601 - csav:115721711 724.546