Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00041 ATGGCGGGCAAAGGGAAAAGGCGACGAGGAAATACAGTCACCATTCCGGTCGATTCAAACCCCACCCAGCAAAATATTCAATCTTTGGATTTTAATGCCGAGTGTGAGGCTGATCAGAGGAAAGCAATCAACTTTACTGAAACAGTTGATGATGGTGTGAAAAGAAAACGTGGCAGAAGAAGTGAAAAGAAGCGCAAGACAACGATGTCCAAGGGCAGTTTGTCCGAGAAGAACAGCGCTCAAGACGAAAACCATGGTGAAAATGGTGGGGTTGGAGTTTCTACCTCTGATCAAGGTGAGAAGAAGAAGCGTGGCAGAAAGAGAAAAAAGGAAAAGGAGAAGATGGAAAGGAAGTTGTTGGGGGAAAATTTATTGGAGAAAAATGCTGAAAATAGCAGGGTCGGATGTTCTTCTTTTCAAGGTGTGAGAAAGGAAAGGAAAGACATGAACAAGAAGATGTCAGAGGGCAATTTGCTGGAGAAGAAGGGTGGTCGAGATGTTAGCCACGGTGAAAGGGATGGGGTAGGTGGTTCTTCTCCTCTTCAAGAAGGCGTGAAAGATGGGGGAAATGACGAGCTTCATGAGAAGAGACTTGGGAGGAAGACAAAAGTTGTTAAGGAAGGTGAAAATGGGGGGGTTGGATTTTCTACCTCTGATCAAGGTGTGAAAAAGAAGCGTGGAAGAAAGAGTAAAAAGGAAAAGGAGGAGATGGAAATGAAGTTGTTGGGGGAAAATTTGTTGGAGAAAAATGGTGAAAATAGCAGGAAAAGACTTGGGAGGAAAAGAAAAGTTGTTAAGGAAGGTGACGGTGAGTTTGAAATGCCTGCCGGTTTTTCGGGAAGTGGAAGTGACATTCGGAAACAACATAATTTTAAAAGCCGTAAAGTCAAAATAGAAGTTGTGATGCCGAAAAAGAATAAGAGGGATAAGGAGTTTATTGAATATGAATCCAAAATGTGCCATCAATGCCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAATTGCAAAAGCAAAAGATTTTGCATTCCCTGTATTCAAAATTGGTATCCTCATTTGAAAGAGGATTGCATTGCAGAGGAATGTCCCGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGCGATCTGATGTACTTATTAAAAAAATGAAGGCAAAAACCAGCACCAATAAAGATGAGAAGGTTGAAATCTCTATGTGTTTGCTGCAAGTACTTCTTCCGTATTTAAGATTGTTGGATGAAGAGCAAAGGATTGAGAATGAGACAGAAGCTAAGATACAGGGAATCTCAGTCTCAGAGCTTGAAGTAGTACACACAGATTATTATAAGGATGAACGTGTATATTGTGACAATTGCAAAATTTCAATATTTGATTACCACAGAAGCTGTACGGAATGTTCTTTCTATCTTTGTCTTATCTGTTGCCGTGAACTTCGTAGTGGTCAGCTTGTAGGGGGTGCAGATCCAATTACGTTGGAGTTTCCATTCAGAGGTCGTGATTACTTGCATGGTGGAAATGTAGATAAAACGGTAAACCAAACAGAATCAAATGCTGCTGCTAAGCCTCTAATTCGCGAATGGTCAAGAGCTGGATGGCATGCAGATAGTAATGGTAGCATTCCTTGTCCAAAAGAATGTAACCATGGTTTTCTTGAACTGAGAACTGTATTAGGTCAACATTTTATTGCTGATTTATTGTGTAAAGCAAATGGACTGGAACAAACATTCAAGCATGAGACCCCTGACAAATTCTGTTTGTGTTCAAGGCCTGATAGAAGCGCAAATTATGGTATGAGGATGGCTGCATCCCGTGCAGATTCTGGTGACAATTATTTGTACTGTCCTAAGGCTGTACAACTACAGGATAAGGATTTAGGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTTAGCCATGTGTTTGATTGTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTGCGTCAGATGAATAATACCAAACGTGAACAACATTTATATGTAAAGGCAATTGATTGCTTAGATTTCTGCGAGGTAGAAATTAAGATGCACCAATTCTTTACTGGGTATACGAAAGCTTTTGGGGATTGGCTTCATTGGCCTCGGATATTGAAGTTAAAAGACTGCCCACCTTCTAATTTATTTGAGGAACGCTTGCCTAGACATTTTGCTGAGTTCATATCTTCTTTACCATTCAAGGAATATACTGATCCTTTTGGGGGTTGCCTTAACATAGCTGTTAAATTTGCTAAAGATTGTCCAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCCCATGAGCTTGGACGTGGTGACTCAGTGACTAAGCTCCACTGTGATATGTCCGATGCTGTAAATGTGTTGACTCATATTGCTGAACTCGAATTGCAACCTGAGCATCTTAGTGCCATTGACAAGTTGAAACTAAAGCACTTTGAGCAAGACAAGAAGGAACTGCATAGTGATCACGATGGAGAAACTAATGTTGACGAAGTAAAAATGAGGCCAGAAAGTGATTTGTCGTTTGCAGGGGATGGTTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAGTATCTGATGAAGCATTTTAGAGAGTTTAGGCATATCCATTGCAGTCCTGTAGAGCAGGTTATTCACCCCATCCATGACCAGACATTCTATTTGACCGTGGAGCATAAGAAGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACATTCGTTCAGAAGCTTGGAGATGCTGTTTTCATTCCAGCCGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAAGTTGCATTGGATTTTGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGATTAACAGAGGAATTTCGTACACTTCCCATAAGCCATGTGTCTGCTGAGGATAAATTGGAGGTGAAAAAGATGGTAATATATGCTATGCAAGATGTGGTAACAAAATTGGAGAAAAAGCAAGGTTCTTGA 3039 0.4149 MAGKGKRRRGNTVTIPVDSNPTQQNIQSLDFNAECEADQRKAINFTETVDDGVKRKRGRRSEKKRKTTMSKGSLSEKNSAQDENHGENGGVGVSTSDQGEKKKRGRKRKKEKEKMERKLLGENLLEKNAENSRVGCSSFQGVRKERKDMNKKMSEGNLLEKKGGRDVSHGERDGVGGSSPLQEGVKDGGNDELHEKRLGRKTKVVKEGENGGVGFSTSDQGVKKKRGRKSKKEKEEMEMKLLGENLLEKNGENSRKRLGRKRKVVKEGDGEFEMPAGFSGSGSDIRKQHNFKSRKVKIEVVMPKKNKRDKEFIEYESKMCHQCQRNDKGRVVRCTNCKSKRFCIPCIQNWYPHLKEDCIAEECPVCRGNCNCKACLRSDVLIKKMKAKTSTNKDEKVEISMCLLQVLLPYLRLLDEEQRIENETEAKIQGISVSELEVVHTDYYKDERVYCDNCKISIFDYHRSCTECSFYLCLICCRELRSGQLVGGADPITLEFPFRGRDYLHGGNVDKTVNQTESNAAAKPLIREWSRAGWHADSNGSIPCPKECNHGFLELRTVLGQHFIADLLCKANGLEQTFKHETPDKFCLCSRPDRSANYGMRMAASRADSGDNYLYCPKAVQLQDKDLGHFQWHWEKGEPVIVSHVFDCTSGLSWEPLVMWRALRQMNNTKREQHLYVKAIDCLDFCEVEIKMHQFFTGYTKAFGDWLHWPRILKLKDCPPSNLFEERLPRHFAEFISSLPFKEYTDPFGGCLNIAVKFAKDCPKPDMGPKTYIAYGFPHELGRGDSVTKLHCDMSDAVNVLTHIAELELQPEHLSAIDKLKLKHFEQDKKELHSDHDGETNVDEVKMRPESDLSFAGDGSEGALWDIFRRQDVPKLQEYLMKHFREFRHIHCSPVEQVIHPIHDQTFYLTVEHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPISHVSAEDKLEVKKMVIYAMQDVVTKLEKKQGS 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 13 32 - -
Vium8158g00041 1012 Gene3D Cupin 613 984 - -
Vium8158g00041 1012 SMART cupin_9 728 976 IPR003347 -
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 140 172 - -
Vium8158g00041 1012 FunFam Transcription factor jumonji domain-containing protein 611 985 - -
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 187 207 - -
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 830 851 - -
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 1 236 - -
Vium8158g00041 1012 MobiDBLite consensus disorder prediction 34 57 - -
Vium8158g00041 1012 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 54 1009 IPR045109 GO:0032454|GO:0033169
Vium8158g00041 1012 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 316 381 IPR018866 -
Vium8158g00041 1012 SUPERFAMILY Clavaminate synthase-like 627 1000 - -
Vium8158g00041 1012 ProSiteProfiles JmjC domain profile. 747 976 IPR003347 -
Vium8158g00041 1012 ProSiteProfiles Zinc finger RING-type profile. 320 367 IPR001841 -
Vium8158g00041 1012 Pfam JmjC domain, hydroxylase 863 959 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00041 Vium-Chr8158 179856 188689 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium8158g00041 JmjC 4.4e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00041 K15601 - gmx:100780803 1111.29