Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00039 ATGTTGACGCATTGCCATGAACTGTTCAAGCCAGTCTCCATCATGATTCTAGTTAACTTGGCTTTGGCTTTTGTCAATTTGCTTCTGAAGAAGGTTCTTAATGAAGGAACGGATTACATGTCCATTATAACTTATCGACAGGCAATTTCGTTTATCTTCATGGCACCTATTGCCTTCATCTATGAAAGGAAACACAAAGTGGAAGTTCGCATAATATTTCTCCTTTTCCTCAGTGCCCTACTCGGAGTAACAGTTCCACAAAACCTATTCCTTCTCGGACTTGAATATACTTCAGCTACGTTCTCGTGTGCGTTCCTCAACATGGTGCCTGTATTTACGTTCATTATGGCAGTGCCATTTGGGATAGAGAAGGTGAATGTGCAAAGCAAGGGAGGCAAAGCTAAAGTCATGGGAACTTTTGTGTGCATTGGTGGAGCCTTGTTGTTGGTCCTTTATAAAGGAATGCCCCTTATCAAGCCACAATCTCAATACATAGCTGACAAAGTTACAAGTGTACCTTCAACTGCCAAGTTAGAGACGTGGATTATAGGTTCCATAATTCTGACTGTAAGCTGCCTCCTGTGGTCTTCATGGTTCATCATACAAGCAAAGATTAGCAAAAAATATCCATGTCAATACTCTTGCACAGCTATTTTGTCACTCTTCGCTGCCATTCAATCAGCAATATTAACTCTGATCATCAAGAGAAATAATGCTTCGTGGATTCTCAAAGGAAAGCTAGAAATAATAAGTATTATATATGCTGGATTGGTAGGGTCGGGCTTGTGCTATGTGGCAATGTCATGGTGTGTCAAACAAAGTGGTCCAGTTTTCACCGCCGCTTTTACCCCCCTTATACAGATATTTGTGGCCATCCTTGATTTCTCTGTACTAAAGGAGGAAATTTATCTGGGAAGTGTTGCAGGATCTGCGTTGGTCATTGCTGGTATGTATATTCTTCTGTGGGGAAAAAGCAAAGAGCAAGGACAAGATGTTCAGAAGGATACGCAAACAAATCAAGATGTAGAACGTCAATAG 1038 0.4104 MLTHCHELFKPVSIMILVNLALAFVNLLLKKVLNEGTDYMSIITYRQAISFIFMAPIAFIYERKHKVEVRIIFLLFLSALLGVTVPQNLFLLGLEYTSATFSCAFLNMVPVFTFIMAVPFGIEKVNVQSKGGKAKVMGTFVCIGGALLLVLYKGMPLIKPQSQYIADKVTSVPSTAKLETWIIGSIILTVSCLLWSSWFIIQAKISKKYPCQYSCTAILSLFAAIQSAILTLIIKRNNASWILKGKLEIISIIYAGLVGSGLCYVAMSWCVKQSGPVFTAAFTPLIQIFVAILDFSVLKEEIYLGSVAGSALVIAGMYILLWGKSKEQGQDVQKDTQTNQDVERQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00039 345 PANTHER WAT1-RELATED PROTEIN 11 334 IPR030184 GO:0016020|GO:0022857
Vium8158g00039 345 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Vium8158g00039 345 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020
Vium8158g00039 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 326 - -
Vium8158g00039 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00039 Vium-Chr8158 170074 171959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00039 7 255 Nodulin-like Gene Family AT3G30340 45.020 1.50e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00039 - - vun:114189567 646.736