Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00035 ATGGAGAACGACACCGCCGCCGCCGCCGCTAACAATAACACCGCCACTGCGAAAGTAGGTTCCGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAAGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGTGAAGGAGAACCAACTGGATCTGCGCCCAACCCTCGCCAACCTACGCGAACCCCGTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCTCTTGCTCGAACCCTCCAGGAACAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGTAGTTGGGAAGGTGAAGGCTATTTGCATGATGATGGAGATGATTTTGATGATCTACACGATGGTACTGACGTGGATGAGGATGATGATGATGATGACGAGGATGACGACGAAGATGATGATAATGAGGAGTATGAAGATGAAGATGCATTTGATGTCCATGCTAATGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGATGAAGCATATGCTAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTTTTGCTGGGATAAATGATCGGGAGGCAGAGGACGTAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGACGTTGACCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACCGATACTATTGCCGGTTTGCCTTCACTCAACTACAAGATTGGGAGTGATCAGCATGGAAGCAATGATTCGTGCGTCATTTGCCGGGTGGACTTTGAGGATGGTGAGTCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1017 0.471 MENDTAAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSAPNPRQPTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGEGYLHDDGDDFDDLHDGTDVDEDDDDDDEDDDEDDDNEEYEDEDAFDVHANAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLAFAGINDREAEDVEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSLNYKIGSDQHGSNDSCVICRVDFEDGESLTHLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00035 338 MobiDBLite consensus disorder prediction 69 85 - -
Vium8158g00035 338 SMART ring_2 287 327 IPR001841 -
Vium8158g00035 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 334 IPR013083 -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 1 27 - -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 132 165 - -
Vium8158g00035 338 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 32 336 IPR043312 -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 46 60 - -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 1 85 - -
Vium8158g00035 338 Pfam Ring finger domain 285 327 IPR001841 -
Vium8158g00035 338 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Vium8158g00035 338 Coils Coil 31 51 - -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 28 45 - -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 166 181 - -
Vium8158g00035 338 MobiDBLite consensus disorder prediction 109 185 - -
Vium8158g00035 338 FunFam E3 ubiquitin ligase BIG BROTHER-related 253 334 - -
Vium8158g00035 338 SUPERFAMILY RING/U-box 278 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00035 Vium-Chr8158 154771 161042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00035 66 231 C3H Transcription Factor Family AT3G19910 44.324 3.53e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00035 K19045 - gmx:100306465 478.018