Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium8158g00034 | ATGGAGAACGACACCGCCGCCGCCGCCGCTAACAATAACACCGCCACTGCGAAAGTAGGTTCCGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAAGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGTGAAGGAGAACCAACTGGATCTGCGCCCAACCCTCGCCAACCTACGCGAACCCCGTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCTCTTGCTCGAACCCTCCAGGAACAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGTAGTTGGGAAGGTGAAGGCTATTTGCATGATGATGGAGATGATTTTGATGATCTACACGATGGTACTGACGTGGATGAGGATGATGATGATGATGACGAGGATGACGACGAAGATGATGATAATGAGGAGTATGAAGATGAAGATGCATTTGATGTCCATGCTAATGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGATGAAGCATATGCTAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTTTTGCTGGGATAAATGATCGGGAGGCAGAGGACGTAGAGGAACATGGTGCTAATTCTCAGGTAAATGTCTCTGTACATGTACTCTCACACGGAACCATGTACACAATACCAAACATTGAAAAGGATGCTTGGGAGGACGTTGACCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACCGATACTATTGCCGGTTTGCCTTCACTCAACTACAAGATTGGGAGTGATCAGCATGGAAGCAATGATTCGTGCGTCATTTGCCGGGTGGACTTTGAGGATGGTGAGTCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG | 1080 | 0.4657 | MENDTAAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSAPNPRQPTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGEGYLHDDGDDFDDLHDGTDVDEDDDDDDEDDDEDDDNEEYEDEDAFDVHANAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLAFAGINDREAEDVEEHGANSQVNVSVHVLSHGTMYTIPNIEKDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSLNYKIGSDQHGSNDSCVICRVDFEDGESLTHLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 69 | 85 | - | - | |
| Vium8158g00034 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 308 | 349 | IPR001841 | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vium8158g00034 | 359 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 274 | 355 | - | - | |
| Vium8158g00034 | 359 | SUPERFAMILY | RING/U-box | 299 | 353 | - | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
| Vium8158g00034 | 359 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 32 | 357 | IPR043312 | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Vium8158g00034 | 359 | SMART | ring_2 | 308 | 348 | IPR001841 | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 132 | 163 | - | - | |
| Vium8158g00034 | 359 | Pfam | Ring finger domain | 306 | 348 | IPR001841 | - | |
| Vium8158g00034 | 359 | Coils | Coil | 31 | 51 | - | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 28 | 45 | - | - | |
| Vium8158g00034 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 273 | 355 | IPR013083 | - | |
| Vium8158g00034 | 359 | MobiDBLite | consensus disorder prediction | 109 | 163 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium8158g00034 | Vium-Chr8158 | 154771 | 161043 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium8158g00034 | 66 | 234 | C3H Transcription Factor Family | AT3G19910 | 44.149 | 1.03e-36 | 131 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium8158g00034 | K19045 | - | gmx:100306465 | 465.692 |