Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00028 ATGATGTCTTCCGGCGGGGACAGTGGGAAGCCATTTTTCTGTCACGTGTGCAATCAGAGGATAACGTGCACCGATGAGTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGTTTCGTGGAGGAATGGAACCCTAATAACCATAGTCATAACCCTAACCCTAATTTCACCCATGAAAGTGGGGGAGAATCTATGGATCCCGAATTCCCGTTCGATTTAATCGACACCATGCTCCCCCTCTTGCTCAACGCGGGTTCCAGGACCCGCCGCGAAGCCGACATGTTCGACCCAAGGACCTACCTCCAGAACTACCTGCAGAACCTTCGCGCCGACGGCGCTAACATTCAATTCTCCTTCGGCAACCCTTCCGACACGGGGTTCCGCCCCTCGTCAAACCTTGGCGACTACTATCTCGGCCCGGGCTTTGAGCAGTTGATTCAGCTGCTCGCCGACAACGACCCAAACCGTTACGGCACGCCACCGGCCGCAAAGGACGCCGTCGAAAATCTCCCCACAGTCACCGTCGACGATGAGTTGCTGAACTCTGAAATGAACCAATGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCACGCAGGTGACGCAGATGCCTTGCAAGCACGCGTATCATGCTGACTGCCTGATTCCTTGGCTTAAGCTGCATAACTCTTGCCCCGTTTGTCGGTATGAACTGCCCACCGATGACGCGGATTATGAGAATCGGACGCGGAGCAGTGGCGATGATGGTGGGTCGAGGTCTGATGTGAGCGATAGTGGCAGTGGCAGTGGCGGTGGCGCGGGAGGGGGAAATGGTAGACCTGTTCACCGGACTGTTAGAATATATTTGCGGCATCCTTTTGATGCAGGTGACTCTGCGCAGGACAGTTCCGAAAGGGGATGGGAGAGTTGGGATTGA 912 0.5581 MMSSGGDSGKPFFCHVCNQRITCTDESEPFCPICLEGFVEEWNPNNHSHNPNPNFTHESGGESMDPEFPFDLIDTMLPLLLNAGSRTRREADMFDPRTYLQNYLQNLRADGANIQFSFGNPSDTGFRPSSNLGDYYLGPGFEQLIQLLADNDPNRYGTPPAAKDAVENLPTVTVDDELLNSEMNQCAVCQDEFEKGTQVTQMPCKHAYHADCLIPWLKLHNSCPVCRYELPTDDADYENRTRSSGDDGGSRSDVSDSGSGSGGGAGGGNGRPVHRTVRIYLRHPFDAGDSAQDSSERGWESWD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00028 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 231 - -
Vium8158g00028 303 Pfam Ring finger domain 184 227 IPR001841 -
Vium8158g00028 303 SUPERFAMILY RING/U-box 165 233 - -
Vium8158g00028 303 FunFam E3 ubiquitin-protein ligase RING1-like 147 233 - -
Vium8158g00028 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 233 IPR013083 -
Vium8158g00028 303 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vium8158g00028 303 SMART ring_2 186 226 IPR001841 -
Vium8158g00028 303 MobiDBLite consensus disorder prediction 235 249 - -
Vium8158g00028 303 MobiDBLite consensus disorder prediction 235 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00028 Vium-Chr8158 131569 133046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00028 97 242 C3H Transcription Factor Family AT5G01980 42.177 2.02e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00028 K11982 - gmx:100785289 414.075