Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00019 ATGTCTCAGACATCCAGTGTCCTGCCTGCCTTCCACTCCATCAAGCCATTGCCCTCTGAGTTCAAGTTTGCCAACAATCCAAACCCTCTGCTTGTGGAAAAACATGGAGATGTTAAATTTAGACGCACCAATCCGATTGGACCAAATGGTTTTGAGAATGGTGCAGTAGTAGGGGAGGTTTCTAAGGAAGTTCGAGGCCGAGCTGGTGGCATGGATCTTTTTGATGAGGATTCACCGTATGGTGGAAAAGGTAGATCATTAAAAGACCGACCATCTAATGCAGATGAAGACTCAGCATCCGTTACTTTGCCCCTGCCATCAACTTTGACATCCTCTAGGGAAAACAGGTGGAATGATACAAATTCTTATGGTTCAAAAAAGAAGCTTCAGTCATGGCTTCAACTACCAAATGGGGATTGGGAGCTGGTAAAGATAATAACAACTTCCGGAGCTGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGAGGATAATTTGGTGCCAGCTAATCCCGACATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCAGCAGTTTTATTCAACCTGCAATATAGATACAACCAAGATATGATATATACGAAAGCTGGGCCTGTTTTGGTTGCTGTAAATCCCTTTAAGAAAGTTCCTTTGTATGGTAATGACTATATTGAAGCCTACAAGTGTAAGGCCATTGAAAGCCCTCATGTTTATGCAATTACTGACACAGCCATCCGAGAAATGATACGAGATGAAGTGAATCAATCCATAATTATAAGTGGTGAGAGTGGAGCAGGAAAGACTGAGACAGCAAAAATAGCAATGCAATACTTGGCTGCCCTTGGTGGCGGCAGTGGAATAGAGAACGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCGAGTCGCTTTGGAAAGCTCATTGAGATTCATTTTAGTGAAACTGGAAAAATATCTGGTGCAAATATTCAAACATTTTTGCTGGAAAAGTCCAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCCTCATCTCTTAGGGAAAAGCTAAATCTACTAAGTGCGGAAGAATATAAATATCTGAGGCAGAGCAATTGTTATTCAATTAGCGGCATAGATGATGCTGAAGAATTTCGCATAGTCAAGGAAGCTCTGGATATTGTCCACATTAGCAAGGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGGTCGATAATGAAAATCATGTTGAAGCTGTTGAGGATGAGGGTCTGTTCACCGTTGCCAAGTTGATTGGATGTGAAATTGAAGACCTGAAATTGACTTTTTCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAGAAGTTGACGCTCTCTCAGGCTATTGATGCGAGAGATGCTTTGGCGAAGTCAATATATGCATGTTTGTTTGATTGGTTGGTTGAGCAAATAAATAAATCCCTTGCAGTTGGCAAAAGACGAACTGGCAGATCAATCAGCATTCTTGATATTTATGGCTTTGAGTCATTCAATAGGAATAGTTTTGAGCAGTTTTGCATAAATTATGCAAACGAAAGATTACAGCAACATTTCAATCGTCATTTGTTCAAGCTGGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTGGAATTTGAAGACAACCAAGATTGCCTTAATCTGTTTGAAAAGAAACCATTGGGACTACTATCCCTGTTAGATGAAGAGTCAACTTTCCCTAATGGCACAGATTTAACGTTTGCTAATAAGCTTAAGCAGCATTTGAATTCCAATTCTTGCTTCAAAGGAGAACGTGAAAAAGCCTTTACTGTGCGTCATTATGCAGGGGAGGTCACTTATGATACATCTGGATTCCTGGAAAAGAACAGGGACCTATTGCACTTAGATTCTATCCAACTTCTATCTTCAAGCAAATGCCATCTTCCTAAGTTATTTGCATCACATATGCTTACTCAGTCTGAGAAGCCTGTTGTAGGTCCCTTACATAAGTCAGGGGGAGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTGTTCCAATTGATGCAACGTCTAGAGAGTACTACACCACATTTTATACGTTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATATGAGCAAAGCCTTGTACTTCAGCAGTTGAGATGTTGTGGAGTTCTGGAAGTGGTTCGAATATCAAGATCGGGCTTTCCAACTAGAGTATCTCACCAAAAGTTTGCCAGGAGATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCGCTCAGTGTCTCAGTTGCTATTCTTCATCAGTTCAACATTTTGCCTGAGATGTTTCAAGTTGGCTACACAAAGCTATTCTTCCGAACAGGGCAGATTGGAGTGCTTGAGGATACCAGAAATCGTACTCTGCATGGAATTTTACGTGTGCAAAGTTGCTTCAGGGGTCACCGAGCTCGTTGTTACCGCAAGGAACTTTGGAGAGGAATTACCATTCTCCAATCATTTATTAGAGGAGAGAAAAGCAGAAAGGAATATGCAAGTTTGCTTCACAGACATAAGGCTGCTGTTATTATACAGAAGCGGTTGAAAACAGTATTTGCAAGGAACAGAATGAAAAGTATTAACGAAGCTGCAGTTGTCATACAATCTTTTATCCGTGGTTGGTTAGTCAGAAGATGCTCTGGAAACATAGTATTATCAAAATCTGGAGTCACGAAGACTAATGAGTCAAATGAGGTTCTTGTGAAGTCGTCTTTCCTCGCTGAACTTCAGCGCCGGGTACTTAAGGCAGAAGCTGCCCTGAGAGAGAAGGAAGAGGAGAATGACATTCTTCACCAACGCCTTCAACAGTATGAGAACAGATGGTCCGAATACGAGTTAAAGATGAAGTCCATGGAACAAGTATGGCAGAAGCAAATGAGATCCCTGCAATCTAGCCTCTCTATTGCAAAGAAGAGCCTGGCTCTGGATGAATCCGAAAGAAATTCAGATGCTTCTGTTAACGCAAGTGACGAGAGAGATTTCAGCTGGGATGTAGGAACCAATCACCGTCGTCAAGAAAGCAACGGGGCAAGATCAATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAGAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGAACCCAGATAGAGAACTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGTTCAAGACTTCGTGAAACAAAAGTCATTTTACATAAACTTGGAAGTGAAGATGGATCAATTGAGAAAGTGAAGAAAAGTTGGTGGGGAAGAAGGAATAGTACCAGAATAAGTTGA 3531 0.4075 MSQTSSVLPAFHSIKPLPSEFKFANNPNPLLVEKHGDVKFRRTNPIGPNGFENGAVVGEVSKEVRGRAGGMDLFDEDSPYGGKGRSLKDRPSNADEDSASVTLPLPSTLTSSRENRWNDTNSYGSKKKLQSWLQLPNGDWELVKIITTSGAESVISLPDGKVLKVKEDNLVPANPDILDGVDDLMQLSYLNEPAVLFNLQYRYNQDMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKCKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPSSLREKLNLLSAEEYKYLRQSNCYSISGIDDAEEFRIVKEALDIVHISKGDQENVFAMLAAVLWLGNISFTVVDNENHVEAVEDEGLFTVAKLIGCEIEDLKLTFSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTSGFLEKNRDLLHLDSIQLLSSSKCHLPKLFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQSLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMFQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHRARCYRKELWRGITILQSFIRGEKSRKEYASLLHRHKAAVIIQKRLKTVFARNRMKSINEAAVVIQSFIRGWLVRRCSGNIVLSKSGVTKTNESNEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEQVWQKQMRSLQSSLSIAKKSLALDESERNSDASVNASDERDFSWDVGTNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILHKLGSEDGSIEKVKKSWWGRRNSTRIS 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00019 1176 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
Vium8158g00019 1176 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 MobiDBLite consensus disorder prediction 69 95 - -
Vium8158g00019 1176 SMART iq_5 924 946 IPR000048 GO:0005515
Vium8158g00019 1176 SMART iq_5 901 923 IPR000048 GO:0005515
Vium8158g00019 1176 SMART iq_5 852 874 IPR000048 GO:0005515
Vium8158g00019 1176 SMART iq_5 875 897 IPR000048 GO:0005515
Vium8158g00019 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 FunFam Unconventional myosin-XIX 549 741 - -
Vium8158g00019 1176 MobiDBLite consensus disorder prediction 69 124 - -
Vium8158g00019 1176 Gene3D - 361 420 - -
Vium8158g00019 1176 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Vium8158g00019 1176 Coils Coil 971 1019 - -
Vium8158g00019 1176 FunFam Myosin heavy chain 361 417 - -
Vium8158g00019 1176 MobiDBLite consensus disorder prediction 96 124 - -
Vium8158g00019 1176 Gene3D - 785 849 - -
Vium8158g00019 1176 Gene3D - 855 903 - -
Vium8158g00019 1176 Gene3D - 904 946 - -
Vium8158g00019 1176 Gene3D - 547 741 - -
Vium8158g00019 1176 Gene3D Kinesin motor domain 182 780 IPR036961 -
Vium8158g00019 1176 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 PANTHER MYOSIN 172 1168 - -
Vium8158g00019 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 899 IPR027417 -
Vium8158g00019 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Vium8158g00019 1176 CDD MYSc_Myo8 193 839 IPR036022 -
Vium8158g00019 1176 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8158g00019 1176 ProSiteProfiles IQ motif profile. 855 881 IPR000048 GO:0005515
Vium8158g00019 1176 Pfam IQ calmodulin-binding motif 927 943 IPR000048 GO:0005515
Vium8158g00019 1176 Pfam IQ calmodulin-binding motif 857 872 IPR000048 GO:0005515
Vium8158g00019 1176 Pfam IQ calmodulin-binding motif 879 896 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00019 Vium-Chr8158 76705 88081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00019 7 1174 Myosins gene family AT1G50360 76.345 0.0 1810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00019 - K10357 gmx:100801124 2194.47