Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8158g00012 ATGTCGGAAGCACCACCGTCTCAGACACCGCCTCAAGCCGCTGACGCACCTCCGCCGCCATACTGGTGCTATCACTGCGAGAAGCGCGTTTCCGTTGAAACGCCCGCCAATCTCCCCGACGTCGTCTGCGGAGAGTGCAAAAACGGCTTCGTGGAAACCATCCCCACGCCGTCGCGCTCGCGCACGCCCTCCGCCTCCTCCGATGACCCTTACTTTGGCTCGCAGTTCCTCCAGGTGCTTCGCCTCATCGCGCAATCTGCACGTGATGATGACGCGTCGCCGCCGCCGCCGCCGAGCCGTTCTCCGGAGACCGATTTCCTCAGGATCGAGCTGGGCGGCTGGGACAACGAAGAGGAGAACGAAATCGAGAACGATGACGATAACGGCGACGAGGAGTTCGAGGAGCATGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAGATGACGAGGATCTGAGAAGGAGAAGGCGCGAGCTGCTTCGTCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCAGAAATTCTGATGGGCCTGGAGGACAATTCCATTGAGTTCCGCCTCAGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGACCGACGGCGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGTCGGCGGTGGAAGCCTTGCCGACGGTGAAGATTGCGTCGGAGAGTGAAACTGTGGTGTGCGCTGTATGTAAGGATTTGCTGGGTGTTGGAGAGGCCGCTAAGAGGTTACCGTGCGGGCATCAGTATCATGGAGATTGCATTGTTCCTTGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAGGGAATATGAGGAAGAGAGAGTGGTTAATGCTGCTTCTTCGAATTCGAACGGAGCTTCGAGTTCCGGTGGAGGTGGAAGGACCATTGTTTGA 1029 0.5938 MSEAPPSQTPPQAADAPPPPYWCYHCEKRVSVETPANLPDVVCGECKNGFVETIPTPSRSRTPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPETDFLRIELGGWDNEEENEIENDDDNGDEEFEEHEEAEDRSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAAEYEALLQTLAETDGGGRRGAPPASKSAVEALPTVKIASESETVVCAVCKDLLGVGEAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDREYEEERVVNAASSNSNGASSSGGGGRTIV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8158g00012 342 MobiDBLite consensus disorder prediction 116 141 - -
Vium8158g00012 342 MobiDBLite consensus disorder prediction 51 71 - -
Vium8158g00012 342 SUPERFAMILY RING/U-box 259 311 - -
Vium8158g00012 342 MobiDBLite consensus disorder prediction 53 71 - -
Vium8158g00012 342 MobiDBLite consensus disorder prediction 113 154 - -
Vium8158g00012 342 MobiDBLite consensus disorder prediction 322 342 - -
Vium8158g00012 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 309 - -
Vium8158g00012 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Vium8158g00012 342 SMART ring_2 264 304 IPR001841 -
Vium8158g00012 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 311 IPR013083 -
Vium8158g00012 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Vium8158g00012 342 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Vium8158g00012 342 Pfam Ring finger domain 264 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8158g00012 Vium-Chr8158 54680 56004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8158g00012 175 317 C3H Transcription Factor Family AT5G01980 48.667 1.08e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8158g00012 - - gmx:100780991 527.324