Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8155g00001 ATGGGCAACTGTTGCTCTGGCAACGCTGCCGATGGCCCGGCTGACATGGCCGCCGCAGATGACAAGGGAGAAACCAACCAACAAAGCATTCGTTCAGACAGCAACAATAATAATGGCGTTGATAACCCTGCCACCACCACTACCACCCCACCGACATCGGCGGCGCCACCTACCGTGACGTCACCTCCATCGAAATCCTCAAAACCGGGCGCCATGGGCCCTGTCTTGGAGAGGCCGATGGAGGACGTGAGAGCAACGTACACCATTGGGAAAGAGCTAGGGAGAGGGCAGTTTGGTGTGACGCATTTGTGCACGGACAAAGTAACCGGTGAACAATTTGCATGCAAAACCATTGCAAAGAGGAAGCTTGTGAGCAAGGAGGATATAGAGGACGTGAGAAGAGAGGTGCAAATCTTGCACCACCTCTCAGGCCAACCTAACATTGTGGAACTTAAAGGTTCCTATGAGGATAAACAATCAGTTCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCCAAGGGCCATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTCTTGCTCAGCAAGGATGAAAATGCACCCCTCAAGGCCACCGATTTTGGTCTTTCCGTTTTCTTCAAAGAAGGAGAACAGTTCAAAGACATTGTGGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATCCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTCACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCTCAAGTTTTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCTGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTACAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCACGATGGCAGGGACATCAAGGAAATCCTTCTAGAAGTTGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATACAGAAGCTGCAACGAGGAAGAGACGTCCCATAGTGGAGTGA 1626 0.4594 MGNCCSGNAADGPADMAAADDKGETNQQSIRSDSNNNNGVDNPATTTTTPPTSAAPPTVTSPPSKSSKPGAMGPVLERPMEDVRATYTIGKELGRGQFGVTHLCTDKVTGEQFACKTIAKRKLVSKEDIEDVRREVQILHHLSGQPNIVELKGSYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGEQFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSHMLNSDPKERFTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILLEVDGDNDGRINYDEFVAMMRKGNTEAATRKRRPIVE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8155g00001 541 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Vium8155g00001 541 ProSiteProfiles EF-hand calcium-binding domain profile. 499 530 IPR002048 GO:0005509
Vium8155g00001 541 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Vium8155g00001 541 Gene3D Transferase(Phosphotransferase) domain 1 173 352 - -
Vium8155g00001 541 SMART efh_1 499 527 IPR002048 GO:0005509
Vium8155g00001 541 SMART efh_1 464 492 IPR002048 GO:0005509
Vium8155g00001 541 SMART efh_1 428 456 IPR002048 GO:0005509
Vium8155g00001 541 SMART efh_1 392 420 IPR002048 GO:0005509
Vium8155g00001 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vium8155g00001 541 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Vium8155g00001 541 SUPERFAMILY Protein kinase-like (PK-like) 86 346 IPR011009 -
Vium8155g00001 541 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Vium8155g00001 541 Pfam EF-hand domain pair 462 525 IPR002048 GO:0005509
Vium8155g00001 541 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8155g00001 541 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Vium8155g00001 541 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8155g00001 541 MobiDBLite consensus disorder prediction 1 79 - -
Vium8155g00001 541 FunFam Calcium-dependent protein kinase 1 89 172 - -
Vium8155g00001 541 CDD STKc_CAMK 87 344 - -
Vium8155g00001 541 SUPERFAMILY EF-hand 385 526 IPR011992 -
Vium8155g00001 541 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Vium8155g00001 541 Gene3D Phosphorylase Kinase; domain 1 88 172 - -
Vium8155g00001 541 ProSitePatterns Protein kinases ATP-binding region signature. 93 120 IPR017441 GO:0005524
Vium8155g00001 541 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Vium8155g00001 541 FunFam Calcium-dependent protein kinase 1 353 528 - -
Vium8155g00001 541 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Vium8155g00001 541 MobiDBLite consensus disorder prediction 22 67 - -
Vium8155g00001 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 520 - -
Vium8155g00001 541 FunFam calcium-dependent protein kinase 1 173 352 - -
Vium8155g00001 541 Gene3D - 353 531 - -
Vium8155g00001 541 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8155g00001 Vium-Chr8155 11714 15054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8155g00001 1 539 EF-hand Containing Proteins AT5G12180 78.664 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium8155g00001 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8155g00001 K13412 - gmx:100781355 927.932