Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8150g00005 ATGCTGCCGGATTCCTCCGAGCAGGACCTCGACGATCCTGACATGGAATTCGTCGAGGTGGATCCCTCTGGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATGTGTTACGTAACTCTGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTACTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCCAAGAGCGAGAACATCAACTTCATTACTGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTCACTATCTTCACAGTAATAATCCTCCGATCATTCATCGTGACCTGAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCGTATGTTGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCCTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGCCGATCTTCAAAAGCTCAAACCCATCATTTAGCAAATATTTCTCATAATCAAGCTATTGTTGTGGATACTTCTGCTGAGGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTCCTCAGGTCATATTCGCAATATCCACTTTCCTTTTGATATCGAAGCAGACACTTCAACCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAACTAACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTTTCACATTCCTAGTTGGAACGTCAGTGAACTTCCTGTTGACAGTTATAGTCAAGATTCAGGCTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCTATGAAACACGATTCCATTACTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCTGACTCGCCAAAGGGAGTTGGTGGAAACTCTCCATATCGTGCTGGTTCTTCAAACTTTTGTTCTGCTGCAGATGCAAACGCTGCGGATGGTAGTCTGGCCGCGAATGGTGATATTTCAGCAGATGATCGTGTTGGTGATTGTAGTGATGAGAAGGTGTGTGATGAGATTGTTGATTCCCCTTCCAGTGAAAAAAGTATTAAATCAGGTGCAACCAGTGAAAAATCTGCTGTGAATGTAATATCTGGAACCGTGAAAGATTCAGAAGCAGAATACATCAATCTCATAGCAACAAAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAATTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGAAGGTTCTAAATATATGCAACCTACAGATGCCTGGCGGTGAAGTGAAGGGAGAGGCTCGCGCTTCATTCATCTAA 1833 0.4179 MLPDSSEQDLDDPDMEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADVLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLHYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGRSSKAQTHHLANISHNQAIVVDTSAEASREFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRFHIPSWNVSELPVDSYSQDSGYTSESRPEASPMKHDSITSPGSLALEILPSGRKFWSDSPKGVGGNSPYRAGSSNFCSAADANAADGSLAANGDISADDRVGDCSDEKVCDEIVDSPSSEKSIKSGATSEKSAVNVISGTVKDSEAEYINLIATKLENLLVKQREELDELKRKHKLAVSDLLKELSPEISQKVLNICNLQMPGGEVKGEARASFI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8150g00005 610 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vium8150g00005 610 MobiDBLite consensus disorder prediction 412 435 - -
Vium8150g00005 610 CDD STKc_WNK 25 285 - -
Vium8150g00005 610 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Vium8150g00005 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 576 - -
Vium8150g00005 610 FunFam Probable serine/threonine-protein kinase WNK3 336 427 - -
Vium8150g00005 610 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8150g00005 610 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Vium8150g00005 610 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8150g00005 610 Gene3D - 336 418 - -
Vium8150g00005 610 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
Vium8150g00005 610 Coils Coil 548 575 - -
Vium8150g00005 610 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8150g00005 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium8150g00005 610 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Vium8150g00005 610 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8150g00005 Vium-Chr8150 18402 22476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8150g00005 102 589 MAP Kinase Kinase Kinase AT3G48260 54.806 8.50e-167 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium8150g00005 Pkinase 5.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8150g00005 K08867 - gmx:100301899 908.672