Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8150g00004 ATGCTGCCGGATTCCTCCGAGCAGGACCTCGACGATCCTGACATGGAATTCGTCGAGGTGGATCCCTCTGGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATGTGTTACGTAACTCTGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTACTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCCAAGAGCGAGAACATCAACTTCATTACTGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTCACTATCTTCACAGTAATAATCCTCCGATCATTCATCGTGACCTGAAGTGTGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCGTATGTTGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCCTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGCCGATCTTCAAAAGCTCAAACCCATCATTTAGCTATTGTTGTGGATACTTCTGCTGAGGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTCCTCAGGTCATATTCGCAATATCCACTTTCCTTTTGATATCGAAGCAGACACTTCAACCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAACTAACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTTTCACATTCCTAGTTGGAACGTCAGTGAACTTCCTGTTGACAGTTATAGTCAAGATTCAGGCTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCTATGAAACACGATTCCATTACTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCTGACTCGCCAAAGGGAGTTGGTGGAAACTCTCCATATCGTGCTGGTTCTTCAAACTTTTGTTCTGCTGCAGATGCAAACGCTGCGGATGGTAGTCTGGCCGCGAATGGTGATATTTCAGCAGATGATCGTGTTGGTGATTGTAGTGATGAGAAGGTGTGTGATGAGATTGTTGATTCCCCTTCCAGTGAAAAAAGTATTAAATCAGGTGCAACCAGTGAAAAATCTGCTGTGAATGTAATATCTGGAACCGTGAAAGATTCAGAAGCAGAATACATCAATCTCATAGCAACAAAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAATTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGAAGGTTCTAAATATATGCAACCTACAGATGCCTGGCGGTGAAGTGAAGGGAGAGGCTCGCGCTTCATTCATCTAA 1812 0.42 MLPDSSEQDLDDPDMEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADVLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLHYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGRSSKAQTHHLAIVVDTSAEASREFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRFHIPSWNVSELPVDSYSQDSGYTSESRPEASPMKHDSITSPGSLALEILPSGRKFWSDSPKGVGGNSPYRAGSSNFCSAADANAADGSLAANGDISADDRVGDCSDEKVCDEIVDSPSSEKSIKSGATSEKSAVNVISGTVKDSEAEYINLIATKLENLLVKQREELDELKRKHKLAVSDLLKELSPEISQKVLNICNLQMPGGEVKGEARASFI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8150g00004 603 FunFam Probable serine/threonine-protein kinase WNK3 329 420 - -
Vium8150g00004 603 Gene3D - 329 411 - -
Vium8150g00004 603 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Vium8150g00004 603 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vium8150g00004 603 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 333 387 IPR024678 GO:0004674|GO:0005524
Vium8150g00004 603 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Vium8150g00004 603 CDD STKc_WNK 25 285 - -
Vium8150g00004 603 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Vium8150g00004 603 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8150g00004 603 Coils Coil 541 568 - -
Vium8150g00004 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 569 - -
Vium8150g00004 603 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8150g00004 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium8150g00004 603 MobiDBLite consensus disorder prediction 405 428 - -
Vium8150g00004 603 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Vium8150g00004 603 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8150g00004 Vium-Chr8150 18402 22476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8150g00004 102 582 MAP Kinase Kinase Kinase AT3G48260 55.280 3.04e-167 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium8150g00004 Pkinase 5.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8150g00004 K08867 - gmx:100301899 912.524