Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8150g00003 ATGGCACTTTCTTCTGCAACTGCTTCCTCCAAACTCATACTCTTCCCACATGCATCGTCTTCGTCTTCTTCTTCCTCACCCTCTTCTCTAAATTCTACACCCTTTCGCTCCACCACTACCACCACCCATAAACTAACCACTCTCTCTTCCTCCTTCCTCCAGCCCTCCACCGTCCTCCGCCGTACACCCTCCACCACAACCCACCGCCGCCAATTCACCGTCCGCGCCGCGCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATAGGCACCATCGGGCATGTCGACCACGGAAAGACCACCCTCACCGCCGCCCTCACCATGGCTCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAGTACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGTGGCATCACCATCAACACCGCCACCGTCGAATACGAAACCGAAAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCGGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGAGCCATCCTGGTGGTCTCCGGCGCCGACGGCCCCATGCCCCAAACGAAAGAACACATCTTGTTGGCAAAACAAGTCGGCGTGCCCAACATGGTGGTGTTCCTGAACAAACAGGACCAAGTCGACGACGAAGAACTCCTCCAGTTGGTGGAACTCGAAGTGCGCGAGCTTCTCTCCTCGTACGAGTTCCCCGGCGACGACATCCCCATCGTCTCGGGTTCCGCACTCTTGGCCCTGGAAGCTCTCATGGCGAACCCTGCAATCAAACGCGGAGAAAACGAATGGGTCGATAAAATCTACCAACTCATGGACGAAGTGGACAACTACATTCCCATTCCGCAGCGCCAAACCGATCTCCCTTTCCTTCTCGCCGTGGAAGATGTTTTCTCAATCACCGGGCGTGGCACGGTGGCGACGGGGCGAGTGGAGCGTGGGACGATCAGAGTTGGCGAAACCGTTGACCTTGTAGGTTTGAGGGAAACGAGGAACACGACGGTGACCGGCGTGGAGATGTTCCAGAAGATTCTTGACGAGGCGTTGGCAGGGGACAACGTGGGGCTTCTGCTGAGAGGGGTTCAGAAGGTGGACATTCAGAGAGGGATGGTTCTGGCGAAGCCTGGCACCATTACGCCGCACACCAAGTTCGTGGCCATTGTTTATGTTCTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCGTTCTTTGCAGGGTACAGGCCTCAGTTTTACATGAGAACCACCGACGTGACGGGGAAGGTGACCTCCATCATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCCGGTGACCGTGTTAAGATGGTCGTCGAGCTCATTGTTCCTGTCGCCTGCGAACAAGGAATGAGGTTCGCCATCAGGGAAGGAGGGAAGACCGTTGGTGCTGGTGTTATCCAATCCATCATCGAGTGA 1455 0.578 MALSSATASSKLILFPHASSSSSSSSPSSLNSTPFRSTTTTTHKLTTLSSSFLQPSTVLRRTPSTTTHRRQFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGENEWVDKIYQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIRVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKVDIQRGMVLAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8150g00003 484 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 289 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 Gene3D Translation factors 291 419 - -
Vium8150g00003 484 Gene3D - 77 288 IPR027417 -
Vium8150g00003 484 Hamap Elongation factor Tu [tuf]. 76 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vium8150g00003 484 SUPERFAMILY Translation proteins 290 386 IPR009000 -
Vium8150g00003 484 CDD EFTU_II 296 382 IPR033720 -
Vium8150g00003 484 PANTHER ELONGATION FACTOR TU-RELATED 23 483 - -
Vium8150g00003 484 NCBIfam elongation factor Tu 77 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vium8150g00003 484 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 383 483 IPR009001 -
Vium8150g00003 484 CDD EFTU_III 385 479 - -
Vium8150g00003 484 Gene3D Translation factors 423 483 - -
Vium8150g00003 484 NCBIfam small GTP-binding protein domain 88 220 IPR005225 GO:0005525
Vium8150g00003 484 MobiDBLite consensus disorder prediction 17 42 - -
Vium8150g00003 484 Pfam Elongation factor Tu domain 2 310 378 IPR004161 GO:0005525
Vium8150g00003 484 FunFam Elongation factor Tu 291 419 - -
Vium8150g00003 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 311 IPR027417 -
Vium8150g00003 484 Pfam Elongation factor Tu C-terminal domain 383 482 IPR004160 -
Vium8150g00003 484 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 PRINTS GTP-binding elongation factor signature 169 180 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 PRINTS GTP-binding elongation factor signature 206 215 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 Pfam Elongation factor Tu GTP binding domain 85 286 IPR000795 GO:0003924|GO:0005525
Vium8150g00003 484 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Vium8150g00003 484 FunFam Elongation factor Tu 423 483 - -
Vium8150g00003 484 CDD EF_Tu 86 288 IPR041709 -
Vium8150g00003 484 FunFam Elongation factor Tu 76 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8150g00003 Vium-Chr8150 7291 9063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8150g00003 83 482 Eukaryotic Initiation Factors Gene Family AT5G60390 30.000 2.24e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8150g00003 K02358 - gmx:100793431 835.484