Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium814g00012 ATGCCATTAAAAGTGTTGCAACGAAGAAGTAGACAACAACAAGGCGAGGAGATAGCACAAATTCTGATCCAACGGCAGGAGGGGGGAATGGAAGGTGCTACATGGGAAGATGAGATGTATATAAGGCAACAATTAACTGATTTCAACCTTGAGGACAAGGTTGTAGTTGAGGAGGAGGGTATTGTTAGACAATTAAAAGTGTACGAAAGAAAGAAAAGGAAAGGAGGGAAGGCATATTTTGTTAATAGGCTCACAGCCGTTCCATCACTAATGAAGACTATTCTTCCGGGATTGAAAACCAATGCTAACATGCGAGTTGAAAATTCATTGAAATTGATTGTGCTCAGCGGTGAAACTTTTTCTTTGACCTTGTGGGAGATGCTTTCAACTATATTACCGAAGACATCAATCTTGAATTTATATGGAAGCACTGAGGTCTCTGGTGACTGTACATATTTTGATTGCAAGAGAATGCCATTGATTTTTAAGGAAGAAAGGCTAACCAGTGTTCCAATAGGTTTACCCATTCCTAACTGTGATGTGATTCTTCTTAGTGAAAATGATGCATCAAATGAGGGAGAGCTATATGTTGGTGGTCATTGCATCTTTAGGGGTTACTACAAGGAATCTAAGGAAATGTCATTTGCAAAATTGCTTCCACATTACAGTTGTGGTGATTTTGTTAAAGGATGCCAAGATAAATTATACTTTAGAACGGGTGATTTAGTCAAACAGTTGCCTAGTGGTGATTTTGTATTTTTGGGAAGAAAAGATCGCATTATAAAAATCAATGGACAGCGTATTGCCCTAGAAGAGGTTGAAGATTTGTTAAGGGAGCATCCACATATAAACGATGCTGCTGTAGTTTGTCGAAATAATAAAGCAGAACTTGTGCTTGTTGAAGCCTTTATCATACTGAAGAAAAAAGAAAGCTTGGGTGAATCATTAATTCCTGCAATCAGAAGTTGGATGATTAACAAACTTCCTTCTGTTGTACTTCCCAACCGTTACTTCTTTATAGAATCATTCCCCCTGTCTCCTAGTGGTAAGGTTAATTATGAATTGTTGTTTGGCTCAGAATTATTGACAAAGAATGTCAAAGATAAAGTTGGTGACATCGACTGCAGCAATCTTTTGCAACTTATTAAAAAGGCATTTCATGATGCTTTGATGATTGAAAAGGTTTGTGATGATGATGATTTCTTTATGATGGGCGGTAACTCTCTTTCTGCTGCACATGCTGCTTACAGTTTGGGGATTGACATGAGATTTCTTTACTACTATCCAAGTGCTCTTAAGCTTTGTATGGCTCTTCTCCAGAAAAAAGGATCTTGCACTTTGCATAACAGTCTGGACTTTTGTTTGCAAATAAACACAGACAGACAAGATAACCATATTTCTATTAATCAAACGGAAAATTCTAGTCCTCTTGAGTCTAGGATGACTTACAAAGATAACAATGATGGTCCGTTTCCTTCTAAACGTTTAAAGAGGGGTTTGACAGATGTTACATCATGGGGTGATGAATTATTCCCATGGTATTCCCCTTCAGTATTATCATTCTCATTGAACCGATGCAACAAGGTCTTGCATAGAGGGCAGCAGGAAGTAATTGATACGCACCAAAATACATGGTCTGCAGACATTCCAAGAGGCAACAGAGGTCACATGAAAGACTTTTGGAAAGTTTACATGGAGTCTTGTGTTGATGCTTCACCAATGCTTGTGTTTAAAGGCACACACATTTATTTGTTCATTGGATCTCACTCTCATAAATTTCTCTGCCTAAATGCTAGAAGTGGTTCTGTCCAGTGGGAGATCAAACTGGAAGGGCGAATTGAAAGTACAGCAGCAATTGTTTCTGATTTTTCCCAGGTTGTTGTTGGTTGTTACATGGGAAAAATATATTTTCTTGATTTTTTGAATGGACACATATGTTGGATTTTCCAAACTTCTGGTGAGGTAAAATCACAGCCGGTTGTAGACAAACGCAGACAATTGATCTGGTGTGGCTCACATGATCATAACTTATATGCTCTTGATTATGAAAAACATTGCTGCGTATTCAAGCTACCATGTGGAGGCAGTATATATGGGTCACCAGCAATTGATGAGGCTCGTGCCTTGCTTTATGTGGCCTCCACTGGTGGTCGTTTAACAGCTATATCATTATTGGCTTCTCCTTTTACTATTTTGTGGCTAAATGAATTAGAAGTTCCTGTGTTTGGTTCTCTTGCAGTCGCCCACAATGGAACTGTGATATGTTGCTTGGTAGATGGTCATGTTCTTGCATTGAGTCCAAATGGATCCGTTGTTTGGAAGAAAACAACTGATGGTCCAATATTTGCTGGGTCATGCATACCTTCTGTTCTTCCTGATGAGGTAGATCTATCTCTTCATGGATTTTACATAGTCATTTACTTAATTCTTTTTCTACTTGCCTTGTTACATCCTTTTTTCAAGATCACTAAAAGATTATATAGGTGTGGCTCACATGATCATAACTTATATGCTCTTGATTATGAAAAACATTGCTGCGTATTCAAGCTACCATGTGGAGGCAGTATATATGGGTCACCAGCAATTGATGAGGCTCGTGCCTTGCTTTATGTGGCCTCCACTGGTGGTCGTTTAACAGCTATATCATTATTGGCTTCTCCTTTTACTATTTTGTGGCTAAATGAATTAGAAGTTCCTGTGTTTGGTTCTCTTGCAGTCGCCCACAATGGAACTGTGATATGTTGCTTGGTAGATGGTCATGTTCTTGCATTGAGTCCAAATGGATCCGTTGTTTGGAAGAAAACAACTGATGGTCCAATATTTGCTGGGTCATGCATACCTTCTGTTCTTCCTGATGAGGTGCTTGTATGCTCCAGAACCGGAAGTGTATACTCATTCAAACTGGAGGAGGGGGACCTACTATGGGAATACAATGTTGGACATCCAATTACAGCATCTGCTTATGTTGACGAGCACTTGCTGGTAGAGTCTGATGCTTCCAATTCCTCAGACAGGCTAATTTGCATTTGTTCCAGTTCTGGAGGCATACACCTTCTTCGAGTGAATATGAATCTCTCCAAAGATACTTATCAACAAAGAAATGTGCAAGAATTTGCAAGGCTAAACTTGGCAGGGGATATATTCTCTTCACCTATAATGATTGGTGGTCGGATTTTTGTTGGTTGTCGGGATGACTACTTGCATTGTATTGCCCTTGAAATTTCTAAACAACAAGAAACTTAA 3243 0.3907 MPLKVLQRRSRQQQGEEIAQILIQRQEGGMEGATWEDEMYIRQQLTDFNLEDKVVVEEEGIVRQLKVYERKKRKGGKAYFVNRLTAVPSLMKTILPGLKTNANMRVENSLKLIVLSGETFSLTLWEMLSTILPKTSILNLYGSTEVSGDCTYFDCKRMPLIFKEERLTSVPIGLPIPNCDVILLSENDASNEGELYVGGHCIFRGYYKESKEMSFAKLLPHYSCGDFVKGCQDKLYFRTGDLVKQLPSGDFVFLGRKDRIIKINGQRIALEEVEDLLREHPHINDAAVVCRNNKAELVLVEAFIILKKKESLGESLIPAIRSWMINKLPSVVLPNRYFFIESFPLSPSGKVNYELLFGSELLTKNVKDKVGDIDCSNLLQLIKKAFHDALMIEKVCDDDDFFMMGGNSLSAAHAAYSLGIDMRFLYYYPSALKLCMALLQKKGSCTLHNSLDFCLQINTDRQDNHISINQTENSSPLESRMTYKDNNDGPFPSKRLKRGLTDVTSWGDELFPWYSPSVLSFSLNRCNKVLHRGQQEVIDTHQNTWSADIPRGNRGHMKDFWKVYMESCVDASPMLVFKGTHIYLFIGSHSHKFLCLNARSGSVQWEIKLEGRIESTAAIVSDFSQVVVGCYMGKIYFLDFLNGHICWIFQTSGEVKSQPVVDKRRQLIWCGSHDHNLYALDYEKHCCVFKLPCGGSIYGSPAIDEARALLYVASTGGRLTAISLLASPFTILWLNELEVPVFGSLAVAHNGTVICCLVDGHVLALSPNGSVVWKKTTDGPIFAGSCIPSVLPDEVDLSLHGFYIVIYLILFLLALLHPFFKITKRLYRCGSHDHNLYALDYEKHCCVFKLPCGGSIYGSPAIDEARALLYVASTGGRLTAISLLASPFTILWLNELEVPVFGSLAVAHNGTVICCLVDGHVLALSPNGSVVWKKTTDGPIFAGSCIPSVLPDEVLVCSRTGSVYSFKLEEGDLLWEYNVGHPITASAYVDEHLLVESDASNSSDRLICICSSSGGIHLLRVNMNLSKDTYQQRNVQEFARLNLAGDIFSSPIMIGGRIFVGCRDDYLHCIALEISKQQET 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium814g00012 1080 Gene3D - 533 725 IPR015943 GO:0005515
Vium814g00012 1080 SMART ire1_9 573 608 IPR018391 -
Vium814g00012 1080 SMART ire1_9 904 935 IPR018391 -
Vium814g00012 1080 SMART ire1_9 745 776 IPR018391 -
Vium814g00012 1080 SMART ire1_9 947 978 IPR018391 -
Vium814g00012 1080 SMART ire1_9 617 650 IPR018391 -
Vium814g00012 1080 Pfam PQQ-like domain 868 1071 IPR002372 -
Vium814g00012 1080 Pfam AMP-binding enzyme 81 263 IPR000873 -
Vium814g00012 1080 Gene3D - 262 360 IPR045851 -
Vium814g00012 1080 FunFam Putative acyl-activating enzyme 19 547 726 - -
Vium814g00012 1080 Gene3D - 76 261 IPR042099 -
Vium814g00012 1080 SUPERFAMILY Acetyl-CoA synthetase-like 81 356 - -
Vium814g00012 1080 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 825 1071 IPR011047 -
Vium814g00012 1080 PANTHER BETA-ALANINE-ACTIVATING ENZYME 78 797 - -
Vium814g00012 1080 Gene3D - 821 1074 IPR015943 GO:0005515
Vium814g00012 1080 Pfam AMP-binding enzyme C-terminal domain 272 350 IPR025110 -
Vium814g00012 1080 Pfam PQQ-like domain 643 682 IPR002372 -
Vium814g00012 1080 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 561 882 IPR011047 -
Vium814g00012 1080 FunFam Putative acyl-activating enzyme 19 886 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium814g00012 Vium-Chr814 45690 67319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium814g00012 84 351 Monolignol Biosynthesis Gene Families AT1G20480 26.182 4.52e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium814g00012 K00142 - gmx:100820175 1239.56