Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8149g00007 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTAGACGACCCCTCCACCGATTCCGTCGTGTCGTGGGGCGAACACAACAACACCTTTGTTGTCTGGAACGTTCCCCAGTTCGCCACAGACATCTTGCCCAAACATTTTAAGCATAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGGTTTTAAGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTCTAAAAAGTATTAGTAGGCGTAAATCTGCCCATATAAATGGTAGTCAGCAACCATCTCAAGTGCAAAAATCAGCTGTTAGAGCATGTGTCGAGGTGGGAAAATTTGGGATTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAGTTGCAAAATGTTGGGCAACGCGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCACAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAAGAAACATATCACCGGGGCTAATAAAAAGAGGAGGCTCCACAGTCAGGAGAAGGATAATTTAACCACCAACAGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAACAATGCTGCAAAATCATTATTTCGCCAGATATTGCAGATAAACAATTCTGCCGCAACCCAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGACGATATCCCTTCTACCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACTGTTCCTCCTGTTTCTGAACTAACAAGTATGGAAGTAGACTCCCAGTTTCCCGTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTTCACCTGCTGTCTTGGGCTTTTGTCAGAGTCAAGGGGTGGAAGCTGCAAGCAGTTTATTGAATCATAATCTGAATGGTGTGGAGGGGAACATGGCGGAGATAGATGTGTCATCTGTTTTGGATGGACCGCACACTGTAGAAGCTGGTTATTCTTCACCCGATGCAGATGGAATTTCCCAACTCCCTGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACGCAGAGGAAATTAAATTTAGCACTCTAGGATGTGGTCTGACTGAAGACCAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAATCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCCTAA 1398 0.4392 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGEHNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFKKVDPDQWEFANEGFLRGEKQLLKSISRRKSAHINGSQQPSQVQKSAVRACVEVGKFGIEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESKKHITGANKKRRLHSQEKDNLTTNSLHSGLDGHVVKYQSSINNAAKSLFRQILQINNSAATQSSIKNPDVFLIDDIPSTIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCMPSISEVQSSPAVLGFCQSQGVEAASSLLNHNLNGVEGNMAEIDVSSVLDGPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDAEEIKFSTLGCGLTEDQGLPLERENEKKNVDKMQHVDNLTKQMGLLASKS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8149g00007 465 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Vium8149g00007 465 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium8149g00007 465 MobiDBLite consensus disorder prediction 207 235 - -
Vium8149g00007 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 296 IPR027725 -
Vium8149g00007 465 Coils Coil 138 158 - -
Vium8149g00007 465 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium8149g00007 465 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium8149g00007 465 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium8149g00007 465 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium8149g00007 465 FunFam Heat shock transcription factor 1 8 105 - -
Vium8149g00007 465 Gene3D - 8 105 IPR036388 -
Vium8149g00007 465 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8149g00007 Vium-Chr8149 46420 49944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8149g00007 12 465 HSF AT5G16820 51.812 2.26e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium8149g00007 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8149g00007 K09419 - gmx:100793665 689.493