Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8144g00008 ATGACAGCCGTTGCCGGACGCCCTGCCGGAATCCCGCAGTTTGCCTCTTGCTCTCTCACCTTTCTCTCTCCTCCTGATGATGCTAAACGTAGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCTTTGCTTTTCTCAACTTGCTTTCTTCTTCCCAAGTGAATTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCACATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCATTATCGGCACCGTCACCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGCGGTTGTGTATTTCCCATGAAGGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGACAGAAATTGCGTTAGGCACGTATCTAGAACAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCTCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCTTCACCTCCATATGGATCTGTAGTTGGGAGTGGTCCCAGTCAAAGTGTTCAGGGAATTCTTCCGGTCAGTGCCAACTTTGTCGGCAGAAACCAGAAAATGAATGTCAGAACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTAGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGAGTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTTTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGCATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGAATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTTAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGCAGTGTCGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCGTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCACTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTTCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGATCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATAACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGACAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCGATTAGGCATGGGAATAGATCCGGCCCCTTAAGAACAGTCCGAAACAAACTTTCTTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCGAAGCGTAATTGGAACGATGGTTACTGGGTTTAA 2355 0.4412 MTAVAGRPAGIPQFASCSLTFLSPPDDAKRRLRLERMPVSVVFLFAFLNLLSSSQVNSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPHHQGPYMTPRQRHHYRHRHHHSMRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELETEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSVVGSGPSQSVQGILPVSANFVGRNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKSRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMDNRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8144g00008 784 SUPERFAMILY Protein kinase-like (PK-like) 359 656 IPR011009 -
Vium8144g00008 784 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Vium8144g00008 784 Gene3D Phosphorylase Kinase; domain 1 352 456 - -
Vium8144g00008 784 CDD STKc_IRAK 387 656 - -
Vium8144g00008 784 Pfam Protein tyrosine and serine/threonine kinase 383 653 IPR001245 GO:0004672|GO:0006468
Vium8144g00008 784 MobiDBLite consensus disorder prediction 763 784 - -
Vium8144g00008 784 Gene3D Transferase(Phosphotransferase) domain 1 457 678 - -
Vium8144g00008 784 FunFam Receptor-like serine/threonine-protein kinase ALE2 457 674 - -
Vium8144g00008 784 PANTHER OS01G0750732 PROTEIN 120 675 - -
Vium8144g00008 784 FunFam receptor-like serine/threonine-protein kinase ALE2 354 456 - -
Vium8144g00008 784 ProSiteProfiles Protein kinase domain profile. 381 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8144g00008 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8144g00008 Vium-Chr8144 85164 92342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8144g00008 131 773 Receptor kinase-like Gene Family AT5G56890 54.600 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium8144g00008 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8144g00008 - - gmx:100792309 1327.38