Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8144g00007 ATGACAGCCGTTGCCGGACGCCCTGCCGGAATCCCGCAGTTTGCCTCTTGCTCTCTCACCTTTCTCTCTCCTCCTGATGATGCTAAACGTAGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCTTTGCTTTTCTCAACTTGCTTTCTTCTTCCCAAGGTTCTTTGCATGCAGTGAATTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCACATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCATTATCGGCACCGTCACCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGCGGTTGTGTATTTCCCATGAAGGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGACAGAAATTGCGTTAGGCACGTATCTAGAACAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCTCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCTTCACCTCCATATGGATCTGTAGTTGGGAGTGGTCCCAGTCAAAGTGTTCAGGGAATTCTTCCGGTCAGTGCCAACTTTGTCGGCAGAAACCAGAAAATGAATGTCAGAACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTAGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGAGTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTTTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGCATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGAATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTTAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGCAGTGTCGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCGTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCACTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTTCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGATCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATAACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGACAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCGATTAGGCATGGGAATAGATCCGGCCCCTTAAGAACAGTCCGAAACAAACTTTCTTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCGAAGCGTAATTGGAACGATGGTTACTGGGTTTAA 2370 0.4414 MTAVAGRPAGIPQFASCSLTFLSPPDDAKRRLRLERMPVSVVFLFAFLNLLSSSQGSLHAVNSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPHHQGPYMTPRQRHHYRHRHHHSMRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELETEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSVVGSGPSQSVQGILPVSANFVGRNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKSRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMDNRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8144g00007 789 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vium8144g00007 789 FunFam receptor-like serine/threonine-protein kinase ALE2 359 461 - -
Vium8144g00007 789 ProSiteProfiles Protein kinase domain profile. 386 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8144g00007 789 PANTHER OS01G0750732 PROTEIN 125 680 - -
Vium8144g00007 789 FunFam Receptor-like serine/threonine-protein kinase ALE2 462 679 - -
Vium8144g00007 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vium8144g00007 789 SUPERFAMILY Protein kinase-like (PK-like) 364 661 IPR011009 -
Vium8144g00007 789 Gene3D Transferase(Phosphotransferase) domain 1 462 683 - -
Vium8144g00007 789 CDD STKc_IRAK 392 661 - -
Vium8144g00007 789 MobiDBLite consensus disorder prediction 768 789 - -
Vium8144g00007 789 Gene3D Phosphorylase Kinase; domain 1 357 461 - -
Vium8144g00007 789 Pfam Protein tyrosine and serine/threonine kinase 388 658 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8144g00007 Vium-Chr8144 85164 92344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8144g00007 136 778 Receptor kinase-like Gene Family AT5G56890 54.600 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium8144g00007 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8144g00007 - - gsj:114406979 1332.39