Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8144g00006 ATGACAGCCGTTGCCGGACGCCCTGCCGGAATCCCGCAGTTTGCCTCTTGCTCTCTCACCTTTCTCTCTCCTCCTGATGATGCTAAACGTAGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCTTTGCTTTTCTCAACTTGCTTTCTTCTTCCCAAGGTTCTTTGCATGCAGTGAATTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCACATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCATTATCGGCACCGTCACCATCACAGCATGAGACCTTATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGCGGTTGTGTATTTCCCATGAAGGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGACAGAAATTGCGTTAGGCACGTATCTAGAACAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCTCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGTTGGGAGTGGTCCCAGTCAAAGTGTTCAGGGAATTCTTCCGGTCAGTGCCAACTTTGTCGGCAGAAACCAGAAAATGAATGTCAGAACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTAGTGGGAGCATTTTCAATTATTTTGAAATGGAAGAAGAGTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTTTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGCATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGCGAATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTTAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGCAGTGTCGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCGTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCACTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTTCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGATCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATAACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGACAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCGATTAGGCATGGGAATAGATCCGGCCCCTTAAGAACAGTCCGAAACAAACTTTCTTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCGAAGCGTAATTGGAACGATGGTTACTGGGTTTAA 2337 0.4412 MTAVAGRPAGIPQFASCSLTFLSPPDDAKRRLRLERMPVSVVFLFAFLNLLSSSQGSLHAVNSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPHHQGPYMTPRQRHHYRHRHHHSMRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELETEIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPVGSGPSQSVQGILPVSANFVGRNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKSRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMDNRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8144g00006 778 Gene3D Transferase(Phosphotransferase) domain 1 451 672 - -
Vium8144g00006 778 ProSiteProfiles Protein kinase domain profile. 375 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8144g00006 778 MobiDBLite consensus disorder prediction 757 778 - -
Vium8144g00006 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Vium8144g00006 778 FunFam receptor-like serine/threonine-protein kinase ALE2 348 450 - -
Vium8144g00006 778 Gene3D Phosphorylase Kinase; domain 1 346 450 - -
Vium8144g00006 778 CDD STKc_IRAK 381 650 - -
Vium8144g00006 778 SUPERFAMILY Protein kinase-like (PK-like) 353 650 IPR011009 -
Vium8144g00006 778 PANTHER OS01G0750732 PROTEIN 125 669 - -
Vium8144g00006 778 Pfam Protein tyrosine and serine/threonine kinase 377 647 IPR001245 GO:0004672|GO:0006468
Vium8144g00006 778 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Vium8144g00006 778 FunFam Receptor-like serine/threonine-protein kinase ALE2 451 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8144g00006 Vium-Chr8144 85164 92345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8144g00006 136 767 Receptor kinase-like Gene Family AT5G56890 54.449 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium8144g00006 PK_Tyr_Ser-Thr 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8144g00006 - - gsj:114406979 1337.4