Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8144g00002 ATGGCTGCTACTGCCAATCCTATAGTTGGGTCCCAGATTTGGGTGGAGGATCCTGACGTGGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAAGGAGAAGTAATTAAAGTCCTTTGTTCTTCAGGGAAGACGGTTGTTGTTGAAGCTTCCAGTATTTATTATCATAAAGATACCGAAGTTCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTCCATGAACCTGGAGTCCTGGATAATCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATTTTGATTGCTGTGAACCCTTTCATAAAGCTCCCGCATTTATATGACAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGCGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAATCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGCTACTCATGAGGTATCTTGCTTACATGGGTGGCAGAGCTGCTGCTGAAGGTAGAACTATCGAGCAAAAGGTCCTGGAGTCCAATCCTGTTTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATATCAGGGGCTGCTATCAGGACTTATCTGCTTGAAAGGTCACGTGTTTGCCAGGTGTCTGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCCCCTCCTGAGGATGTTAAAAAGTACAAATTAGGAAATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTAGAGGGGTTTGATGAATCTAAGGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATTTTTAAAGTTGTCGCTGCAATTTTACATCTTGGGAACGTCGAATTTAAGAAAGGGAAGGAGGTAGACTCATCTTTGCCCAGAGATGAAAAATCTTGGTTCCATCTAGAGACTGCTGCTGAGCTTTTCATGTGTGATGTAAAGGCACTTGAAGATTCTCTTTGCAAACGAGTAATTGTTAATAGAGATGAAACAATTACGAAATGGCTCGATCCAGAAGCTGCTGCACTCAGTCGAGATGCCTTGGCTAAGATTGTGTACTCAAGATTGTTTGATTGGTTGGTTGATAAAATTAATAATTCTATTGGGCAAGATCCTGAGTCAAAATCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAACCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGCATGTTTCCTAGATCTACAAATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAATAAAGATTATATGGTTGCAGAGCACCAGGCACTTCTTTGTGCTTCAAAATGCCCCTTTGTATCGGGTCTGTTTCCTCCTTCACCTGAGGAATCTTCAAAACAATCAAAGTTCTCCTCCATTGGCTCACGATTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTCAGTTCCACTGAGCCACATTACATTCGTTGTGTAAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCCGGGTATCCTACAAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTAACTGCTTGCAAGAGTATTCTAAAGAATGTTGGACTTGAAGGTTGTCAGATTGGTAAGACAAAGGTGTTTCTCCGAGCTGGCCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAGGTCAGCAAGCATTATTCAGAGAAAAGTTCGGTCATATTTGCAACGCCGAAGTTTCATATTGCTTCGTCTGTCGGCTTTGAGGATTCAAACTGCATGCAGAGGACAACTTGCTCGGCAAGTGTACGAGGAAATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGGTGCTTCCGCATGCATATTGCTAGGAAGGCATACAATGATTTGTATGCTACTGCTGTCACTGTCCAGACTGGTATGAGGGGAATGGCTGCGCGTTGTGAGCTATACTTTAGAAGGAGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCAGAAATACTTGGCACAACTTCATTTCACCGAACTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCAAGAGTTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAAAACAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAAGAAGCAAGAGCTCAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTACTTCTGGAAAAGGAGAAAGAGGCTACAAAAATAGCAGCAGAGAGAGCTCCCGTTATACAGGAGATTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAAGTTCGAAGAGGCTAGCAAAATTGGTGAAGAAAGGTTAAAGCAAGCTTTGGATGCGGAATCAAAAGTAATCCAGTTGAAGACAGCTATGCAAAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCACTACTAAACTCATCTGTGAAAACAATAGCAGAACACCTGTCTTCCCCAGTGGACGAGAAATTAGAAAATGGTCACCATGTGGCAGAAGAGCTGAAACCTGTTGATACATTTGTTACGCCTGTGAAACAATTTGGTACAGAATCTGACTTCAAACTGAGGAGATCTTACATTGAACGAAAACATGAGAGTGTTGATTCACTTGTTAACTGTGTTATGAAAAATATTGGCTTCAGTCATGGAAAACCCATTGCTGCATTCACCATTTACAAGTGTCTTCTCCACTGGAAATCTTTTGAAGCTGAAAGAACCAGTGTATTTGATCGCCTGATCCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGCAATGATCATATGGCCTACTGGCTGTCGAATACATCTGCGTTACTGTTTTTACTTGAACAAAGTCTTAAATCTGTGAGTTCAACAAATGCTACCCCAGTTAGAAAACCACCTAATCCAACATCTCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATCCGATGTTGTACGCAAGGTAGAAGCTAAGTACCCTGCCTTGCTTTTCAAGCAGCAGTTGACAGCGTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACTGCGGTCCTTGCATTATGCATCCAGGCACCAAGAACTTCAAAGGGAGGGTTACGTTCTGGCCGATCCTTAGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTACTATTGAATCCCTGAATACCCTCCTCTGTACATTGAAAGAGAACTTTGTGCCACCAGTTCTTATTCAAAAGATCTTCAGTCAGACATTCTCATATATTAATGTGCAACTTTTCAATAGTCTTCTTCTTCGACGTGATTGTTGTACATTCAGCAACGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGATCATCATGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTACAGGATTTCCTACGATGAAATCATCAACGATTTATGTCCTATCTTGAGTGTTCAACAGCTATACAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTGCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCTAGCATCCCCTTCTCAGTGGATGATCTTTCTACATCACTGCAAGAGAACGACTTCTCAGACATGAAACCAGCGGATGAGCTTCTTGAAAATCCAGCCTTCCAATTTTTGAACGAGTAG 4539 0.4074 MAATANPIVGSQIWVEDPDVAWIDGEVLEVKGEVIKVLCSSGKTVVVEASSIYYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTIEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGNPRMFHYLNQSNCFELEGFDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNVEFKKGKEVDSSLPRDEKSWFHLETAAELFMCDVKALEDSLCKRVIVNRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTNETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYMVAEHQALLCASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKSILKNVGLEGCQIGKTKVFLRAGQMAELDTRRSEILGRSASIIQRKVRSYLQRRSFILLRLSALRIQTACRGQLARQVYEEMRQEASSLVIQRCFRMHIARKAYNDLYATAVTVQTGMRGMAARCELYFRRRTKAAIVIQSHCQKYLAQLHFTELKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKSKLEKQVEDLTLRLQLEKRLRVDMEEARAQENQRLQSALQEMQLQFKETKLLLEKEKEATKIAAERAPVIQEIPVVDHALLEKLSSENEKLKNMVSSLEKKIDETEKKFEEASKIGEERLKQALDAESKVIQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPVDEKLENGHHVAEELKPVDTFVTPVKQFGTESDFKLRRSYIERKHESVDSLVNCVMKNIGFSHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSVSSTNATPVRKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTAVLALCIQAPRTSKGGLRSGRSLAKDSPMVHWQSTIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQENDFSDMKPADELLENPAFQFLNE 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8144g00002 1512 Gene3D - 440 624 - -
Vium8144g00002 1512 Pfam IQ calmodulin-binding motif 787 804 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Vium8144g00002 1512 Gene3D - 667 734 - -
Vium8144g00002 1512 PANTHER MYOSIN 59 1446 - -
Vium8144g00002 1512 Coils Coil 1015 1049 - -
Vium8144g00002 1512 FunFam unconventional myosin-Va 834 882 - -
Vium8144g00002 1512 CDD MyosinXI_CBD 1108 1481 IPR037975 GO:0007015
Vium8144g00002 1512 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Vium8144g00002 1512 Coils Coil 892 951 - -
Vium8144g00002 1512 FunFam Myosin 2 313 431 - -
Vium8144g00002 1512 ProSiteProfiles Dilute domain profile. 1157 1458 IPR002710 -
Vium8144g00002 1512 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Vium8144g00002 1512 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Vium8144g00002 1512 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vium8144g00002 1512 ProSiteProfiles Myosin motor domain profile. 63 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 CDD MYSc_Myo11 77 721 IPR036018 -
Vium8144g00002 1512 FunFam Myosin heavy chain 253 308 - -
Vium8144g00002 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Vium8144g00002 1512 SMART DIL_2 1333 1440 IPR002710 -
Vium8144g00002 1512 Coils Coil 973 1007 - -
Vium8144g00002 1512 Gene3D Kinesin motor domain 66 663 IPR036961 -
Vium8144g00002 1512 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam DIL domain 1334 1436 IPR002710 -
Vium8144g00002 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 786 IPR027417 -
Vium8144g00002 1512 SMART iq_5 735 757 IPR000048 GO:0005515
Vium8144g00002 1512 SMART iq_5 854 876 IPR000048 GO:0005515
Vium8144g00002 1512 SMART iq_5 783 805 IPR000048 GO:0005515
Vium8144g00002 1512 SMART iq_5 758 780 IPR000048 GO:0005515
Vium8144g00002 1512 SMART iq_5 831 853 IPR000048 GO:0005515
Vium8144g00002 1512 Pfam Myosin head (motor domain) 65 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 Gene3D - 834 883 - -
Vium8144g00002 1512 Gene3D - 736 785 - -
Vium8144g00002 1512 Gene3D - 786 833 - -
Vium8144g00002 1512 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 SMART MYSc_2a 57 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium8144g00002 1512 FunFam Class V myosin 440 579 - -
Vium8144g00002 1512 Gene3D - 253 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8144g00002 Vium-Chr8144 45374 63816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8144g00002 1 1511 Myosins gene family AT5G43900 74.506 0.0 2328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8144g00002 K10357 - gmx:100795648 2764.56