Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8141g00005 ATGGATTCAGAAAGCGAGGCTGTTAAGACACCAAAGAGGGAATTGGAAGCAGAAGGGGCTCTGAATTCAAAGATGAAGGGTGCTGGAAACATAAGCAGTAAGGATATGATATTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCGCAGCTGGAAAAGCACTTGAGCAGGGTTTGGTCAAGGAGCACCACTGAGGCAAAACGGGCCAAAGAAGACTGGGAGGTCGATTTGGCCAAATTGGATCTACGATATGTTGTGGCTCAGGGAGCCTATGGTACTGTATACAGGGGCACCTATGATTCTCATGACGTTGCTGTGAAAGTATTGGACTGGGGTGAGGATGGTGTAGCTACACCAGCTGAAGCTGCTGCTTTACGGGCATCTTTTAGACAGGAGGTTGCTGTCTGGCACAAACTTGACCATCCTAATGTGACAAAATTTGTTGGAGCTTCGATGGGCACTTCGAATCTCAAGATTCCCTCAAAAAATTCGAATGGAGAGGAAGAGACTCTTCCTTCCAGGGCATGCTGTGTCATTGTTGAGTTTATCTCTGGTGGGACACTGAAGCAATACTTGATCAAAAATAGGAGGAAGAAACTAGCTTACAAGGTTGTGGTTCAGCTGGCTTTGGATCTTGCAAGAGGTCTTCATTATCTACACTCGAAGAAGATTGTTCATCGAGATGTTAAATCAGAGAATATGTTACTAAGTCCTAGTCGTAATCTGAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTATGAATCCAAGCGACATGACAGGTGAAACTGGAACCCTTGGATACATGGCCCCAGAGGTTCTGGATGGGAAGCCTTACAACAGGAGATGCGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTACTGCTGTGATATGCCTTATCCAGATCTAAGTTTTGCTGATGTATCATCTGCAGTTGTTCGGCAAAATTTACGACCAGACATACCAAGGTGTTGTCCAAGCGCCTTATCAAACATCATGCGGAGATGTTGGGATGCGAATCCGAACAAGCGGCCAGAAATGGACGAGGTGGTGAGAATGCTGGAAGCACTTGATACCAGCAAAGGTGGTGGAATGATACCAGAAGATCAGAATTCAGGGTGCTTCTGTTTTGCTCCAACCCGTGGGCCCTGA 1164 0.457 MDSESEAVKTPKRELEAEGALNSKMKGAGNISSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSTTEAKRAKEDWEVDLAKLDLRYVVAQGAYGTVYRGTYDSHDVAVKVLDWGEDGVATPAEAAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSKNSNGEEETLPSRACCVIVEFISGGTLKQYLIKNRRKKLAYKVVVQLALDLARGLHYLHSKKIVHRDVKSENMLLSPSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALSNIMRRCWDANPNKRPEMDEVVRMLEALDTSKGGGMIPEDQNSGCFCFAPTRGP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8141g00005 387 MobiDBLite consensus disorder prediction 1 20 - -
Vium8141g00005 387 SMART serkin_6 81 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8141g00005 387 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Vium8141g00005 387 FunFam Kinase suppressor of Ras 1 70 165 - -
Vium8141g00005 387 Pfam Protein tyrosine and serine/threonine kinase 84 358 IPR001245 GO:0004672|GO:0006468
Vium8141g00005 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vium8141g00005 387 FunFam Serine/threonine-protein kinase HT1 184 369 - -
Vium8141g00005 387 MobiDBLite consensus disorder prediction 1 21 - -
Vium8141g00005 387 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Vium8141g00005 387 Gene3D Transferase(Phosphotransferase) domain 1 186 373 - -
Vium8141g00005 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672|GO:0006468
Vium8141g00005 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Vium8141g00005 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672|GO:0006468
Vium8141g00005 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672|GO:0006468
Vium8141g00005 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 65 361 - -
Vium8141g00005 387 CDD STKc_MAP3K-like 87 358 - -
Vium8141g00005 387 ProSiteProfiles Protein kinase domain profile. 81 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8141g00005 Vium-Chr8141 45568 51015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8141g00005 1 387 MAP Kinase Kinase Kinase AT3G22750 76.227 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium8141g00005 PK_Tyr_Ser-Thr 2.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8141g00005 - - gmx:100803917 714.531