Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8141g00002 ATGGACACCCCAGAGAGGAACCAGATCAGTGCTACCCTCTCAAAGTTTGAGGATTCACCTGTTTTCAATTATATCAACAGTTTGTCTCCTATAAAGCCCGTGAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCACCTCCATCCGTTTTCACATCACCCCACGTCAGCTGTCTCAAGGAATCTAGATTCCTCAGAAGACATATCCCATTGGGCACATGGAAGCCTAAGGTTTCTTCTGAAGATGTAAATAAAGTTCACACAAGTGAAGAAGAAGAGACTCTTGCAGATTCTAAACGTGCCCATCATAACAAGACTGAATCACAGGAGAACACTGAAAAAAGGGTTTCTATAGGAGATGCTTCAATTGAGCTATCTAGCGAGCACATAAAATTCTCAGATGAGCCGCAGCAAACTTTAAAGTATGACACTTGCGGTAGCCCTGGCTATGATCCCTCACTCTGTGATGATGAGGATAGCACTCTTTTGGAAATTGCCGGTGAGGCAGCAGCAGATGTTGGCTACGTTCAGGAAGGGTGTAAAACTGATTCAGTCGAGAGTGAAGTTCATCTTCAGGAAATATGTCAGATGGAGCCAAAAAGTGAAGATCCAGACTGTTACTGGGATAGTTTAGTTCCTGATGGCTCTGATATGCTAATCTTTAACTCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTGATGCACAAACCGTTGGACCCTTCTATACGACTGAGCGATTTTATGTCTGTGCTGCCACTTTCTGCTGTCCATAATGGTAGGAAAATGTTCATTGTTGATTCGGTTGCTTCAGGTTCTGAACATGAAATTGGAGATCATTGTTCTGAGCCAACGATCGCAGCCACGGACACGGATCAAACACGGGATAATCTTGCCGATGTTGTTTTGGTGACTAGCAATTATAACGAGAACGCAAATGATCAGCTTGTTTCTGTCACGCACCGTGCCATACGGAGGCGTTGTCTGGACTTTGAGATGGCCAATGTGCAAAAGAAGAACTCTGATGATAATTCAAAAGCCAGTTCAAGTACATCCGAGTCTGATGAGAGGAATGTTGCCAATGAAAAGCAACTTCTTCCAGCAAAACTCAACGGGAATTTTCAGAGGGGGATTTTGCAGGGAATTGGTCTACACCTGAATGCACTTGCCGCCTTAAAAGAATACAAGGGCATACAAATTGAAAATTTGTCTTCTGGAAGACATCTCAGTCTTCCCAACTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACAGCAGCATCTACCGTTGGTACCTGTATCATCTGAAAGAGATTTGGATTCATCAGACAATGTGCTTCAGTCTACCGAAGATTGTTCCCAGCCATCAGTTTACATGGCTGGTGAAGACTTCAATAAGAATAGCCCAAGAAAGAAAAAGCGTAAGTTGGAGACACCTGGAGAAACTGAGGGCTGTAAACGCTGCAACTGCAAGAAGTCAAAGTGTTTGAAGCTTTACTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGAAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTTCCTGAAATTGGGGAGGATCCAAATAAAACTCCGGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCCAGCTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTCGGTTGCTCCATTGGGTGTAGATGCGAAGGGTGCAAGAATGCTTTCGGCAGAAAAGATGGTTCTGCTCCTGTAAGCATAGAAACTGAGCAAGAAGAAACGGAAACAACTGACAAGGCTATGGCAGAGAAAGCTTCACAGAAAACTGAAATTCAGAACACCGAAGATCATCCGGATTCTGCTACTATGTCAACACCATTACGACTCTCCAGGCCTTTGCTTCCGCTGCCCTTTTCATCAAAGGGAAAGGCACCAAGATCCTTCGTTACCACCATCTCAGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAAACAAACTCTCTTTGGTCTCAATCCAAGCATTTTCAAACTGTCCCAGATGATGAAATGCCGGATATTCTCCTAGGTGATACCTCTCCTATCACATGCATTAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCCAGCTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGAAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCTCTCACCCTTAG 2334 0.4422 MDTPERNQISATLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTWKPKVSSEDVNKVHTSEEEETLADSKRAHHNKTESQENTEKRVSIGDASIELSSEHIKFSDEPQQTLKYDTCGSPGYDPSLCDDEDSTLLEIAGEAAADVGYVQEGCKTDSVESEVHLQEICQMEPKSEDPDCYWDSLVPDGSDMLIFNSPGEAEAFKGLMHKPLDPSIRLSDFMSVLPLSAVHNGRKMFIVDSVASGSEHEIGDHCSEPTIAATDTDQTRDNLADVVLVTSNYNENANDQLVSVTHRAIRRRCLDFEMANVQKKNSDDNSKASSSTSESDERNVANEKQLLPAKLNGNFQRGILQGIGLHLNALAALKEYKGIQIENLSSGRHLSLPNSTSLQISTSQEQQHLPLVPVSSERDLDSSDNVLQSTEDCSQPSVYMAGEDFNKNSPRKKKRKLETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGEDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSAPVSIETEQEETETTDKAMAEKASQKTEIQNTEDHPDSATMSTPLRLSRPLLPLPFSSKGKAPRSFVTTISGSALFASQKLGKTNSLWSQSKHFQTVPDDEMPDILLGDTSPITCIKTSSPNGKRISSPSCDLGSSPSRRGGRKLILQSIPSFPSLTSHP 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8141g00002 777 MobiDBLite consensus disorder prediction 627 650 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 86 120 - -
Vium8141g00002 777 ProSiteProfiles CRC domain profile. 487 612 IPR005172 -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 735 777 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 735 752 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 615 661 - -
Vium8141g00002 777 SMART CXC_2 486 527 IPR033467 -
Vium8141g00002 777 SMART CXC_2 572 613 IPR033467 -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 462 487 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 468 487 - -
Vium8141g00002 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 489 524 IPR005172 -
Vium8141g00002 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 575 610 IPR005172 -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 338 362 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 343 358 - -
Vium8141g00002 777 MobiDBLite consensus disorder prediction 86 118 - -
Vium8141g00002 777 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8141g00002 Vium-Chr8141 29271 34059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8141g00002 16 774 CPP Transcription Factor Family AT4G14770 42.968 6.71e-160 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium8141g00002 TCR 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8141g00002 - - gmx:100804447 1275.38