Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8140g00004 ATGTTTTGGACTAATAATACTTATTATTATTCCCTTCTGGCCACCATTTTCTTAGTGCTAACATTGGTTTTCCCTTCAGAAGGACAATTGAGTGCAACCTTCTATTCCAGTACATGCTCCAATGTCTCAACCATTGTGAGGAATTCTGTGCAGCAGGCTTTGACATCTGATTCACGTATTGCTGCAAGCCTCACTCGTCTCCACTTTCATGATTGCTTTGTCGATGGCTGTGATGGGTCCATTTTGCTCGATGTTGGTGGTAACATCACACAAAGTGAGAAAGATGCAGCTCCGAACGCCAATTCCGTTCGGGGGTATGATGTGATTGACAGCATCAAGAGCACCGTCGAAAGTTCATGCCCTGGTGTTGTATCTTGTGCTGATATTCTTGCACTTGCTGCAGAATCTTCTGTGTCTCTGTCAGAAGGTCCTTCATGGACTGTATTACTTGGAAGAAGAGACAGTTTAACTGCAAACCAAGGTGGTGCCAACACCTCCCTTCCATCTCCATTTGAGAGCCTGGCCAACATCACATCCAAATTCTCTGCTGTTGGCTTAGACACAACAGATCTTGTTGCATTGTCTGGAGCACACACCTTTGGTCGTTCGCAATGTCAATTTTTCTCGCAAAGATTGTTCGACTTCAATGGCACAGGAAACCCTGACTCTACCTTGAACACAACATATTTGAGCACTCTGCAACAAAATTGTCCCCAGAATGGGAATGGTGCTACATTGAACGACCTTGATCTTTCAACCCCTGACACTTTTGACAACGACTATTTCACCAATCTTCTCATCCACAAAGGTCTTCTCCAAACAGACCAAGAACTCTTCTCCACTGATGGTGCTTCCACAATCCCCATTGTTAACAACTTTGCCAACAACCAAACTGCTTTCTTTGAAGCCTTTGCTCAGTCCATGATCAACATGGGCAACATTAACCCTTTGACTGGAACTCAAGGAGAAATCAGAAGTGACTGCAAGAAAGTTAACGGAAGTTAA 1005 0.4398 MFWTNNTYYYSLLATIFLVLTLVFPSEGQLSATFYSSTCSNVSTIVRNSVQQALTSDSRIAASLTRLHFHDCFVDGCDGSILLDVGGNITQSEKDAAPNANSVRGYDVIDSIKSTVESSCPGVVSCADILALAAESSVSLSEGPSWTVLLGRRDSLTANQGGANTSLPSPFESLANITSKFSAVGLDTTDLVALSGAHTFGRSQCQFFSQRLFDFNGTGNPDSTLNTTYLSTLQQNCPQNGNGATLNDLDLSTPDTFDNDYFTNLLIHKGLLQTDQELFSTDGASTIPIVNNFANNQTAFFEAFAQSMINMGNINPLTGTQGEIRSDCKKVNGS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8140g00004 334 FunFam Peroxidase 168 311 - -
Vium8140g00004 334 CDD secretory_peroxidase 29 331 IPR033905 GO:0004601|GO:0042744
Vium8140g00004 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vium8140g00004 334 FunFam Peroxidase 33 180 - -
Vium8140g00004 334 Gene3D - 34 332 - -
Vium8140g00004 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 ProSiteProfiles Plant heme peroxidase family profile. 29 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 Gene3D Peroxidase, domain 2 168 311 - -
Vium8140g00004 334 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 SUPERFAMILY Heme-dependent peroxidases 29 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 PANTHER PEROXIDASE 72-RELATED 28 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00004 334 Pfam Peroxidase 46 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8140g00004 Vium-Chr8140 57005 59509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8140g00004 12 334 Peroxidase AT5G06720 69.659 1.47e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8140g00004 K00430 - gmx:100782549 557.37