Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8140g00003 ATGTTTTCTACTAATAATACTTATTATTTCCTTCTGGCCACCATTTTCTCAGTGCTAACATTTGTTCTTCCTTCAGAAGGGCAATTGAGTGCAACCTTCTATTCCAGTACATGCTCCAATGTCTCAACCATTGTGAGGAATTCTGTGCAGCAGGCTTTGACATCTGATTCACGTATTGCTGCAAGCCTCACTCGTCTCCACTTTCATGATTGCTTTGTCGATGGCTGTGATGGGTCCATTTTGCTCGATGTTGGTGGTAACATCACACAAAGTGAGAAAACTGCAGCTCCCAACGCCAATTCCGTTCGGGGATTTGACGTGGTTGACAGCATCAAGAGTTCCCTCGAAAGTTCATGCCCTGGTGTTGTATCTTGTGCTGATATTCTTGCCCTTGCTGCAGAATCCTCTGTGTCCCTGTCTGGAGGTCCTTCATGGACTGTATTACTTGGAAGAAGAGACAGTTTAACTGCAAACCAAGCTGGTGCCAACACTTCCATTCCGTCTCCATTTGAGAGCCTAGCCAACATCACATCCAAATTTTCTGCCGTTGGCTTAGACACAACAGATCTTGTTGCACTATCTGGTGCGCACACTTTTGGACGTGCACAATGCCAGTTTTTCTCCCAAAGGTTATTCAACTTCAGTGGCACAGGAAGTCCTGATCCAACCCTGAACTCAACCTATTTGGCCACTCTACAGCAAAACTGTCCCCAAAATGGGAGTGGGTCTACATTGAACAACCTTGATCCTTCAACCGCTGACACTTTTGACAACAACTATTTCACCAATCTTCTCATCAACATGGGTCTTCTCCAAACAGACCAAGAGCTCTTCTCCACCAATGGCTCTTCCACAATCTCCATTGTTAACAACTTTGCCAACAACCAATCGGCTTTCTTCGAAACTTTTGCTCAATCAATGATCAACATGGGTAACATCAGTCCTTTGACAGGTACTCAAGGCGAAATCAGAACTGATTGCAAGAAAGTCAATGGAAGTTGA 1002 0.4461 MFSTNNTYYFLLATIFSVLTFVLPSEGQLSATFYSSTCSNVSTIVRNSVQQALTSDSRIAASLTRLHFHDCFVDGCDGSILLDVGGNITQSEKTAAPNANSVRGFDVVDSIKSSLESSCPGVVSCADILALAAESSVSLSGGPSWTVLLGRRDSLTANQAGANTSIPSPFESLANITSKFSAVGLDTTDLVALSGAHTFGRAQCQFFSQRLFNFSGTGSPDPTLNSTYLATLQQNCPQNGSGSTLNNLDPSTADTFDNNYFTNLLINMGLLQTDQELFSTNGSSTISIVNNFANNQSAFFETFAQSMINMGNISPLTGTQGEIRTDCKKVNGS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8140g00003 333 SUPERFAMILY Heme-dependent peroxidases 28 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 ProSiteProfiles Plant heme peroxidase family profile. 28 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 CDD secretory_peroxidase 28 330 IPR033905 GO:0004601|GO:0042744
Vium8140g00003 333 Gene3D - 33 331 - -
Vium8140g00003 333 Gene3D Peroxidase, domain 2 167 310 - -
Vium8140g00003 333 Pfam Peroxidase 45 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Vium8140g00003 333 PANTHER PEROXIDASE 72-RELATED 27 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 FunFam Peroxidase 32 179 - -
Vium8140g00003 333 FunFam Peroxidase 167 310 - -
Vium8140g00003 333 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium8140g00003 333 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8140g00003 Vium-Chr8140 38420 40153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8140g00003 10 333 Peroxidase AT5G06720 73.457 2.22e-171 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8140g00003 K00430 - gmx:100782549 584.334