Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8135g00013 ATGTCTCGTCGCGGCTCTCAGCATTCCGATTTCAACCGTCCGCCGCAATCCTCGGCTTCTTCTTCCACTGCCGGAGGCCGAGGCCGAGGCCGCGGTCGAGGTCGCGGACATTCCGCTCCGTCTCCTCCGGTTCAAACATCCTACCCTCCTCCTGCACAAACTTCATCCGCTGCTTCTCTGGCCCCGTCTACTGCCGCTCCTCCCCGCGCGGTGGCGCCTGTCCCTGCATCAGCAGGGCCTGGTCCATCCCGCCCTCCGCCGGTCCAAGCCTCGCCGGCGCCAGTTTCTGGATCGGGAGCGGTTACTACAACGGCGCCGTCTCCGGCAGTTCATTCAGTTACTTCGGCGCTCGAGAAGCAACTTACATTGGAGACGTCGGCACCGTCGTCGTCTAAGGCTAATAGATACCCAGACCGGCCAGGATTCGGGAGAGCGGGGAGGAAGATCCAAATTCGAGCAAATCATTTTCAAGTTCAAGTTGGGGTGCAAGAGATATATCACTACGATGTGGCGATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATCGACTTGTTGGTTCGAGCACACCGTGAATCGATTCTGGGAAATCGCATGCCGGCTTATGATGGACGAAAAAGTCTTTTTACCGCCGGACCACTGCCTTTTGAAATTAAGGAATTTAAGGTCAAACTGGGAGATAACGATGAACCAGGGGCTTCTGCCACCCCAACTTCTTCCAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATACGATTTGCTTCGAAGACTGACCTTCATCACCTTATTCAGTTTCTCAGTCGCCGTCAGTTGGACTGCCCTCAGGAAACTATTCAGGCCCTTGATGTTGTGCTGCGGGCTACACCTTCTGAGAATTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCTGCATTGGGACCTAAAGGACCGTTGGGTAGTGGAACTGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTCTCAGCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGACTTCATTTCGAAGAATTTTAGACTCGATTTTCGCAGGCCTTTGCCTGATCAGGACCGAGTTAAGATTAAGAAAGCTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTCACAAAAGAACCGCTCAGAGCCTTAATGTTTAATGATGACACTGGAACAAAAAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGAAGTGACACTAAGCCAATTTTTTTGCCTATGGAGCTGTGTCAAATTGTTGCTGGACAGAGATACACTAAAAAATTAAATGAGGATCAAGTGACTGCTCTTTTAAAGGCCACATGTCAGCGTCCTCATGAAAGGGAAGACTCTATCAGAAAGATTGTGAGGCAGAGCAAATTCAGCGCGGACAAATTTGCCCGCCACTTTGACATTCAAGTGAGGGAGGATCCAGTGACACTTGATGCTCGTGTATTACCTCCTCCCATGCTTAAATACCATGGATCGGGTGGTGAATCACAGGTTCAACCAAAGATGGGCCAATGGAATATGATTAATAAGAGAATGATTGCTGGTGGTACTGTTGAACACTGGACTTGCCTAAACTTCTCTGGAAGAATACACAGAGATCTGCCATATCAACATTGTCAGGATTTGGCTGAAATGTGTAACAGCAAGGGAATGCGGTTTAAAGAAAGTCCTGCACTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTTGTGAACCTGCATAAGCAGTGTAAACAGGCGAATGTAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCGTATGGGAAAATAAAGCGCATATGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGTCAGCCCAAACAATTGGTAAAACCGAACAGGCAGCAATATCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTAGGTGGTACAAACACGATATTGAATGATGCATTTGTGCGTAGAATACCTCATGTCTCCGATGTACCGACGATAATATTTGGTGCAGATGTTACGCATCCCCAGCCAGGGGAGGACAGCAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAAAGGAGTTGTTTCTGCGCAGAAACATAGGGACGAAATGATACACGATCTTTATATTGGAGATCCGGCAGGGGGAATTCCACATTCAGGAATTATCAGGGAGTTGTTTCGTGCTTTCCGAATTTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTCTATGAAATGGATGCCATAAGAAAGGCTTGTAACTCTTTAGAAGAGAATTATTTACCCCCAGTTACTTTTGTGGTGGTCCAAAAGAGGCACCACACTCGGTTGTTCCCTGCTAATCACGGAGCACGTGATACTACAGATAGAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGGAACAAGCCGACCAACTCATTACCATGTATTGTACGATGAGAATAAATTTACTGCTGATGAGTTGCAAATTTTGACCAATAATTTGTGTTACACCTATGCAAGGTGTACTCGATCAGTTTCAATAGTTCCTCCAGCATATTATGCCCATTTGGCCGCATTCCGTGCTCGCTATTACATTGAAGGTGACGCATCAGATGCTGGTTCTTCAACTGGAGGCAAGGGTGTTTTAGCCAGCTTTGAGGTTAAATTGCCATCGGTGAAGGGTAATGTCGCCAACGTGATGTTTTTCTGTTGA 2973 0.4595 MSRRGSQHSDFNRPPQSSASSSTAGGRGRGRGRGRGHSAPSPPVQTSYPPPAQTSSAASLAPSTAAPPRAVAPVPASAGPGPSRPPPVQASPAPVSGSGAVTTTAPSPAVHSVTSALEKQLTLETSAPSSSKANRYPDRPGFGRAGRKIQIRANHFQVQVGVQEIYHYDVAITPEITSKKVSRDVIDLLVRAHRESILGNRMPAYDGRKSLFTAGPLPFEIKEFKVKLGDNDEPGASATPTSSRKKREREFRVTIRFASKTDLHHLIQFLSRRQLDCPQETIQALDVVLRATPSENFDVVGRSFFSPALGPKGPLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVLDFISKNFRLDFRRPLPDQDRVKIKKALRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFNDDTGTKKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVTALLKATCQRPHEREDSIRKIVRQSKFSADKFARHFDIQVREDPVTLDARVLPPPMLKYHGSGGESQVQPKMGQWNMINKRMIAGGTVEHWTCLNFSGRIHRDLPYQHCQDLAEMCNSKGMRFKESPALPITSSPSGQIENALVNLHKQCKQANVGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPKQLVKPNRQQYLENLALKINVKVGGTNTILNDAFVRRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHRDEMIHDLYIGDPAGGIPHSGIIRELFRAFRISTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACNSLEENYLPPVTFVVVQKRHHTRLFPANHGARDTTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDASDAGSSTGGKGVLASFEVKLPSVKGNVANVMFFC 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8135g00013 990 SMART Piwi_a_2 634 953 IPR003165 GO:0003676
Vium8135g00013 990 MobiDBLite consensus disorder prediction 73 92 - -
Vium8135g00013 990 ProSiteProfiles Piwi domain profile. 634 953 IPR003165 GO:0003676
Vium8135g00013 990 Pfam PAZ domain 372 478 IPR003100 GO:0005515
Vium8135g00013 990 Gene3D - 704 990 IPR036397 GO:0003676
Vium8135g00013 990 Pfam Argonaute linker 1 domain 300 349 IPR014811 -
Vium8135g00013 990 Pfam Piwi domain 635 952 IPR003165 GO:0003676
Vium8135g00013 990 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 128 954 - -
Vium8135g00013 990 SUPERFAMILY PAZ domain 149 499 IPR036085 GO:0005515
Vium8135g00013 990 FunFam Argonaute 10 526 697 - -
Vium8135g00013 990 Pfam N-terminal domain of argonaute 147 289 IPR032474 -
Vium8135g00013 990 Pfam Mid domain of argonaute 545 623 IPR032473 -
Vium8135g00013 990 ProSiteProfiles PAZ domain profile. 351 462 IPR003100 GO:0005515
Vium8135g00013 990 Pfam Argonaute linker 2 domain 488 534 IPR032472 -
Vium8135g00013 990 SUPERFAMILY Ribonuclease H-like 618 953 IPR012337 -
Vium8135g00013 990 CDD PAZ_argonaute_like 350 461 - -
Vium8135g00013 990 CDD Piwi_ago-like 506 952 IPR045246 -
Vium8135g00013 990 SMART PAZ_2_a_3 351 487 IPR003100 GO:0005515
Vium8135g00013 990 SMART DUF1785_2 298 350 IPR014811 -
Vium8135g00013 990 FunFam protein argonaute 10-like 703 990 - -
Vium8135g00013 990 MobiDBLite consensus disorder prediction 1 144 - -
Vium8135g00013 990 Gene3D paz domain 345 466 - -
Vium8135g00013 990 Gene3D - 526 698 - -
Vium8135g00013 990 MobiDBLite consensus disorder prediction 7 25 - -
Vium8135g00013 990 MobiDBLite consensus disorder prediction 95 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8135g00013 Vium-Chr8135 131133 137153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8135g00013 86 990 Eukaryotic Initiation Factors Gene Family AT1G48410 56.077 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8135g00013 K11593 - gmx:100799033 1370.14