Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium8135g00012 | ATGTCTCGTCGCGGCTCTCAGCATTCCGATTTCAACCGTCCGCCGCAATCCTCGGCTTCTTCTTCCACTGCCGGAGGCCGAGGCCGAGGCCGCGGTCGAGGTCGCGGACATTCCGCTCCGTCTCCTCCGGTTCAAACATCCTACCCTCCTCCTGCACAAACTTCATCCGCTGCTTCTCTGGCCCCGTCTACTGCCGCTCCTCCCCGCGCGGTGGCGCCTGTCCCTGCATCAGCAGGGCCTGGTCCATCCCGCCCTCCGCCGGTCCAAGCCTCGCCGGCGCCAGTTTCTGGATCGGGAGCGGTTACTACAACGGCGCCGTCTCCGGCAGTTCATTCAGTTACTTCGGCGCTCGAGAAGCAACTTACATTGGAGACGTCGGCACCGTCGTCGTCTAAGGCTAATAGATACCCAGACCGGCCAGGATTCGGGAGAGCGGGGAGGAAGATCCAAATTCGAGCAAATCATTTTCAAGTTCAAGTTGGGGTGCAAGAGATATATCACTACGATGTGGCGATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATCGACTTGTTGGTTCGAGCACACCGTGAATCGATTCTGGGAAATCGCATGCCGGCTTATGATGGACGAAAAAGTCTTTTTACCGCCGGACCACTGCCTTTTGAAATTAAGGAATTTAAGGTCAAACTGGGAGATAACGATGAACCAAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATACGATTTGCTTCGAAGACTGACCTTCATCACCTTATTCAGTTTCTCAGTCGCCGTCAGTTGGACTGCCCTCAGGAAACTATTCAGGCCCTTGATGTTGTGCTGCGGGCTACACCTTCTGAGAATTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCTGCATTGGGACCTAAAGGACCGTTGGGTAGTGGAACTGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTCTCAGCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGACTTCATTTCGAAGAATTTTAGACTCGATTTTCGCAGGCCTTTGCCTGATCAGGACCGAGTTAAGATTAAGAAAGCTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTCACAAAAGAACCGCTCAGAGCCTTAATGTTTAATGATGACACTGGAACAAAAAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGAAGTGACACTAAGCCAATTTTTTTGCCTATGGAGCTGTGTCAAATTGTTGCTGGACAGAGATACACTAAAAAATTAAATGAGGATCAAGTGACTGCTCTTTTAAAGGCCACATGTCAGCGTCCTCATGAAAGGGAAGACTCTATCAGAAAGATTGTGAGGCAGAGCAAATTCAGCGCGGACAAATTTGCCCGCCACTTTGACATTCAAGTGAGGGAGGATCCAGTGACACTTGATGCTCGTGTATTACCTCCTCCCATGCTTAAATACCATGGATCGGGTGGTGAATCACAGGTTCAACCAAAGATGGGCCAATGGAATATGATTAATAAGAGAATGATTGCTGGTGGTACTGTTGAACACTGGACTTGCCTAAACTTCTCTGGAAGAATACACAGAGATCTGCCATATCAACATTGTCAGGATTTGGCTGAAATGTGTAACAGCAAGGGAATGCGGTTTAAAGAAAGTCCTGCACTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTTGTGAACCTGCATAAGCAGTGTAAACAGGCGAATGTAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCGTATGGGAAAATAAAGCGCATATGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGTCAGCCCAAACAATTGGTAAAACCGAACAGGCAGCAATATCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTAGGTGGTACAAACACGATATTGAATGATGCATTTGTGCGTAGAATACCTCATGTCTCCGATGTACCGACGATAATATTTGGTGCAGATGTTACGCATCCCCAGCCAGGGGAGGACAGCAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAAAGGAGTTGTTTCTGCGCAGAAACATAGGGACGAAATGATACACGATCTTTATATTGGAGATCCGGCAGGGGGAATTCCACATTCAGGAATTATCAGGGAGTTGTTTCGTGCTTTCCGAATTTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTCTATGAAATGGATGCCATAAGAAAGGCTTGTAACTCTTTAGAAGAGAATTATTTACCCCCAGTTACTTTTGTGGTGGTCCAAAAGAGGCACCACACTCGGTTGTTCCCTGCTAATCACGGAGCACGTGATACTACAGATAGAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGGAACAAGCCGACCAACTCATTACCATGTATTGTACGATGAGAATAAATTTACTGCTGATGAGTTGCAAATTTTGACCAATAATTTGTGTTACACCTATGCAAGGTGTACTCGATCAGTTTCAATAGTTCCTCCAGCATATTATGCCCATTTGGCCGCATTCCGTGCTCGCTATTACATTGAAGGTGACGCATCAGATGCTGGTTCTTCAACTGGAGGCAAGGGTGTTTTAGCCAGCTTTGAGGTTAAATTGCCATCGGTGAAGGGTAATGTCGCCAACGTGATGTTTTTCTGTTGA | 2946 | 0.4579 | MSRRGSQHSDFNRPPQSSASSSTAGGRGRGRGRGRGHSAPSPPVQTSYPPPAQTSSAASLAPSTAAPPRAVAPVPASAGPGPSRPPPVQASPAPVSGSGAVTTTAPSPAVHSVTSALEKQLTLETSAPSSSKANRYPDRPGFGRAGRKIQIRANHFQVQVGVQEIYHYDVAITPEITSKKVSRDVIDLLVRAHRESILGNRMPAYDGRKSLFTAGPLPFEIKEFKVKLGDNDEPRKKREREFRVTIRFASKTDLHHLIQFLSRRQLDCPQETIQALDVVLRATPSENFDVVGRSFFSPALGPKGPLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVLDFISKNFRLDFRRPLPDQDRVKIKKALRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFNDDTGTKKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVTALLKATCQRPHEREDSIRKIVRQSKFSADKFARHFDIQVREDPVTLDARVLPPPMLKYHGSGGESQVQPKMGQWNMINKRMIAGGTVEHWTCLNFSGRIHRDLPYQHCQDLAEMCNSKGMRFKESPALPITSSPSGQIENALVNLHKQCKQANVGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPKQLVKPNRQQYLENLALKINVKVGGTNTILNDAFVRRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHRDEMIHDLYIGDPAGGIPHSGIIRELFRAFRISTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACNSLEENYLPPVTFVVVQKRHHTRLFPANHGARDTTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDASDAGSSTGGKGVLASFEVKLPSVKGNVANVMFFC | 981 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium8135g00012 | 981 | MobiDBLite | consensus disorder prediction | 73 | 92 | - | - | |
Vium8135g00012 | 981 | CDD | PAZ_argonaute_like | 341 | 452 | - | - | |
Vium8135g00012 | 981 | SUPERFAMILY | Ribonuclease H-like | 609 | 944 | IPR012337 | - | |
Vium8135g00012 | 981 | SMART | Piwi_a_2 | 625 | 944 | IPR003165 | GO:0003676 | |
Vium8135g00012 | 981 | Gene3D | - | 695 | 981 | IPR036397 | GO:0003676 | |
Vium8135g00012 | 981 | SMART | PAZ_2_a_3 | 342 | 478 | IPR003100 | GO:0005515 | |
Vium8135g00012 | 981 | SMART | DUF1785_2 | 289 | 341 | IPR014811 | - | |
Vium8135g00012 | 981 | FunFam | protein argonaute 10-like | 694 | 981 | - | - | |
Vium8135g00012 | 981 | Gene3D | - | 517 | 689 | - | - | |
Vium8135g00012 | 981 | Pfam | Argonaute linker 1 domain | 291 | 340 | IPR014811 | - | |
Vium8135g00012 | 981 | CDD | Piwi_ago-like | 497 | 943 | IPR045246 | - | |
Vium8135g00012 | 981 | FunFam | Argonaute 10 | 517 | 688 | - | - | |
Vium8135g00012 | 981 | Pfam | N-terminal domain of argonaute | 147 | 280 | IPR032474 | - | |
Vium8135g00012 | 981 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 128 | 945 | - | - | |
Vium8135g00012 | 981 | Pfam | Piwi domain | 626 | 943 | IPR003165 | GO:0003676 | |
Vium8135g00012 | 981 | ProSiteProfiles | Piwi domain profile. | 625 | 944 | IPR003165 | GO:0003676 | |
Vium8135g00012 | 981 | Pfam | PAZ domain | 363 | 469 | IPR003100 | GO:0005515 | |
Vium8135g00012 | 981 | Gene3D | paz domain | 336 | 457 | - | - | |
Vium8135g00012 | 981 | MobiDBLite | consensus disorder prediction | 1 | 144 | - | - | |
Vium8135g00012 | 981 | Pfam | Mid domain of argonaute | 536 | 614 | IPR032473 | - | |
Vium8135g00012 | 981 | SUPERFAMILY | PAZ domain | 149 | 490 | IPR036085 | GO:0005515 | |
Vium8135g00012 | 981 | Pfam | Argonaute linker 2 domain | 479 | 525 | IPR032472 | - | |
Vium8135g00012 | 981 | ProSiteProfiles | PAZ domain profile. | 342 | 453 | IPR003100 | GO:0005515 | |
Vium8135g00012 | 981 | MobiDBLite | consensus disorder prediction | 95 | 133 | - | - | |
Vium8135g00012 | 981 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium8135g00012 | Vium-Chr8135 | 131133 | 137153 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium8135g00012 | 86 | 981 | Eukaryotic Initiation Factors Gene Family | AT1G48410 | 56.176 | 0.0 | 1026 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium8135g00012 | K11593 | - | gmx:100799033 | 1362.44 |