Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8135g00012 ATGTCTCGTCGCGGCTCTCAGCATTCCGATTTCAACCGTCCGCCGCAATCCTCGGCTTCTTCTTCCACTGCCGGAGGCCGAGGCCGAGGCCGCGGTCGAGGTCGCGGACATTCCGCTCCGTCTCCTCCGGTTCAAACATCCTACCCTCCTCCTGCACAAACTTCATCCGCTGCTTCTCTGGCCCCGTCTACTGCCGCTCCTCCCCGCGCGGTGGCGCCTGTCCCTGCATCAGCAGGGCCTGGTCCATCCCGCCCTCCGCCGGTCCAAGCCTCGCCGGCGCCAGTTTCTGGATCGGGAGCGGTTACTACAACGGCGCCGTCTCCGGCAGTTCATTCAGTTACTTCGGCGCTCGAGAAGCAACTTACATTGGAGACGTCGGCACCGTCGTCGTCTAAGGCTAATAGATACCCAGACCGGCCAGGATTCGGGAGAGCGGGGAGGAAGATCCAAATTCGAGCAAATCATTTTCAAGTTCAAGTTGGGGTGCAAGAGATATATCACTACGATGTGGCGATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATCGACTTGTTGGTTCGAGCACACCGTGAATCGATTCTGGGAAATCGCATGCCGGCTTATGATGGACGAAAAAGTCTTTTTACCGCCGGACCACTGCCTTTTGAAATTAAGGAATTTAAGGTCAAACTGGGAGATAACGATGAACCAAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATACGATTTGCTTCGAAGACTGACCTTCATCACCTTATTCAGTTTCTCAGTCGCCGTCAGTTGGACTGCCCTCAGGAAACTATTCAGGCCCTTGATGTTGTGCTGCGGGCTACACCTTCTGAGAATTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCTGCATTGGGACCTAAAGGACCGTTGGGTAGTGGAACTGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCTCTTAATATTGATGTCTCAGCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGACTTCATTTCGAAGAATTTTAGACTCGATTTTCGCAGGCCTTTGCCTGATCAGGACCGAGTTAAGATTAAGAAAGCTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTCACAAAAGAACCGCTCAGAGCCTTAATGTTTAATGATGACACTGGAACAAAAAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGAAGTGACACTAAGCCAATTTTTTTGCCTATGGAGCTGTGTCAAATTGTTGCTGGACAGAGATACACTAAAAAATTAAATGAGGATCAAGTGACTGCTCTTTTAAAGGCCACATGTCAGCGTCCTCATGAAAGGGAAGACTCTATCAGAAAGATTGTGAGGCAGAGCAAATTCAGCGCGGACAAATTTGCCCGCCACTTTGACATTCAAGTGAGGGAGGATCCAGTGACACTTGATGCTCGTGTATTACCTCCTCCCATGCTTAAATACCATGGATCGGGTGGTGAATCACAGGTTCAACCAAAGATGGGCCAATGGAATATGATTAATAAGAGAATGATTGCTGGTGGTACTGTTGAACACTGGACTTGCCTAAACTTCTCTGGAAGAATACACAGAGATCTGCCATATCAACATTGTCAGGATTTGGCTGAAATGTGTAACAGCAAGGGAATGCGGTTTAAAGAAAGTCCTGCACTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCTCTTGTGAACCTGCATAAGCAGTGTAAACAGGCGAATGTAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCGTATGGGAAAATAAAGCGCATATGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGTCAGCCCAAACAATTGGTAAAACCGAACAGGCAGCAATATCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTAGGTGGTACAAACACGATATTGAATGATGCATTTGTGCGTAGAATACCTCATGTCTCCGATGTACCGACGATAATATTTGGTGCAGATGTTACGCATCCCCAGCCAGGGGAGGACAGCAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAAAGGAGTTGTTTCTGCGCAGAAACATAGGGACGAAATGATACACGATCTTTATATTGGAGATCCGGCAGGGGGAATTCCACATTCAGGAATTATCAGGGAGTTGTTTCGTGCTTTCCGAATTTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTCTATGAAATGGATGCCATAAGAAAGGCTTGTAACTCTTTAGAAGAGAATTATTTACCCCCAGTTACTTTTGTGGTGGTCCAAAAGAGGCACCACACTCGGTTGTTCCCTGCTAATCACGGAGCACGTGATACTACAGATAGAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGGAACAAGCCGACCAACTCATTACCATGTATTGTACGATGAGAATAAATTTACTGCTGATGAGTTGCAAATTTTGACCAATAATTTGTGTTACACCTATGCAAGGTGTACTCGATCAGTTTCAATAGTTCCTCCAGCATATTATGCCCATTTGGCCGCATTCCGTGCTCGCTATTACATTGAAGGTGACGCATCAGATGCTGGTTCTTCAACTGGAGGCAAGGGTGTTTTAGCCAGCTTTGAGGTTAAATTGCCATCGGTGAAGGGTAATGTCGCCAACGTGATGTTTTTCTGTTGA 2946 0.4579 MSRRGSQHSDFNRPPQSSASSSTAGGRGRGRGRGRGHSAPSPPVQTSYPPPAQTSSAASLAPSTAAPPRAVAPVPASAGPGPSRPPPVQASPAPVSGSGAVTTTAPSPAVHSVTSALEKQLTLETSAPSSSKANRYPDRPGFGRAGRKIQIRANHFQVQVGVQEIYHYDVAITPEITSKKVSRDVIDLLVRAHRESILGNRMPAYDGRKSLFTAGPLPFEIKEFKVKLGDNDEPRKKREREFRVTIRFASKTDLHHLIQFLSRRQLDCPQETIQALDVVLRATPSENFDVVGRSFFSPALGPKGPLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVLDFISKNFRLDFRRPLPDQDRVKIKKALRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFNDDTGTKKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKKLNEDQVTALLKATCQRPHEREDSIRKIVRQSKFSADKFARHFDIQVREDPVTLDARVLPPPMLKYHGSGGESQVQPKMGQWNMINKRMIAGGTVEHWTCLNFSGRIHRDLPYQHCQDLAEMCNSKGMRFKESPALPITSSPSGQIENALVNLHKQCKQANVGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPKQLVKPNRQQYLENLALKINVKVGGTNTILNDAFVRRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHRDEMIHDLYIGDPAGGIPHSGIIRELFRAFRISTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACNSLEENYLPPVTFVVVQKRHHTRLFPANHGARDTTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDASDAGSSTGGKGVLASFEVKLPSVKGNVANVMFFC 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8135g00012 981 MobiDBLite consensus disorder prediction 73 92 - -
Vium8135g00012 981 CDD PAZ_argonaute_like 341 452 - -
Vium8135g00012 981 SUPERFAMILY Ribonuclease H-like 609 944 IPR012337 -
Vium8135g00012 981 SMART Piwi_a_2 625 944 IPR003165 GO:0003676
Vium8135g00012 981 Gene3D - 695 981 IPR036397 GO:0003676
Vium8135g00012 981 SMART PAZ_2_a_3 342 478 IPR003100 GO:0005515
Vium8135g00012 981 SMART DUF1785_2 289 341 IPR014811 -
Vium8135g00012 981 FunFam protein argonaute 10-like 694 981 - -
Vium8135g00012 981 Gene3D - 517 689 - -
Vium8135g00012 981 Pfam Argonaute linker 1 domain 291 340 IPR014811 -
Vium8135g00012 981 CDD Piwi_ago-like 497 943 IPR045246 -
Vium8135g00012 981 FunFam Argonaute 10 517 688 - -
Vium8135g00012 981 Pfam N-terminal domain of argonaute 147 280 IPR032474 -
Vium8135g00012 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 128 945 - -
Vium8135g00012 981 Pfam Piwi domain 626 943 IPR003165 GO:0003676
Vium8135g00012 981 ProSiteProfiles Piwi domain profile. 625 944 IPR003165 GO:0003676
Vium8135g00012 981 Pfam PAZ domain 363 469 IPR003100 GO:0005515
Vium8135g00012 981 Gene3D paz domain 336 457 - -
Vium8135g00012 981 MobiDBLite consensus disorder prediction 1 144 - -
Vium8135g00012 981 Pfam Mid domain of argonaute 536 614 IPR032473 -
Vium8135g00012 981 SUPERFAMILY PAZ domain 149 490 IPR036085 GO:0005515
Vium8135g00012 981 Pfam Argonaute linker 2 domain 479 525 IPR032472 -
Vium8135g00012 981 ProSiteProfiles PAZ domain profile. 342 453 IPR003100 GO:0005515
Vium8135g00012 981 MobiDBLite consensus disorder prediction 95 133 - -
Vium8135g00012 981 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8135g00012 Vium-Chr8135 131133 137153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8135g00012 86 981 Eukaryotic Initiation Factors Gene Family AT1G48410 56.176 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8135g00012 K11593 - gmx:100799033 1362.44