Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8135g00009 ATGGAGAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTACAGGCGTGGAGGGTACCATGCCGTTCGAATCGGCGATGCTTTCAACAACGGCCGCTACGTCGTGCAGTCCAAGCTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCATTTCGCGTTTTGTAGCCCTTAAAATTCAAAAGAGTGCCCAACATTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATAGCCGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTCAAGCATTCGGGGCCTAATGGACAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATTAAATATACTGACTATCGTGGGGTTCCACTCCATATGGTTAAAGAAATCTGTTTTCATATATTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTTATACACACTGATTTGAAACCAGAAAATGTGTTGCTTCAGTCACTGATAAATCCATCCAAAGATCCTAGGAAATCAGGTGCTTCACTCATCCTTCCGAATACCAAGGATAAGGCTGCGTCTAATAATGGGACTCACCAAGACAATAAAATTTTGAATGGAGATCCACTGAAGAACCAGAAAAAGAAAGTGAAGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTGGGACGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGACCCGAGCAAGAAGATTGTGGCAATGATGTAAAATCAAGTGTAGAATCTGTTGAAGATAAACCTGATAGTTCTCTGAGTAAAGATGAATCAACAAAGAATTTTGAAAAGGATGCTTCACAAGGAAGTCATAGTCATATGAGTAGCAGCCGTTTGATGAAAAAGAAATTGCTAGCAGCCGTTGATCTTAGGTGCAAGCTGGTTGATTTTGGAAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTAGGGGGACGCTATTCTCGAGAATTTTTCAATACACATGGTGACTTGAGGCACATAAGCAATTTGAGATTCTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGCTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGTCTTAGTCATCCGTGGTTGAATGCAGGTCCCCGTACTCTTCAGCCCTCAATAACATCCGCTCAACCTGATGCCGTCAATGAGGAATTGTCTGAAAGAAGGAAAAGGGAAGCTGCTGAAAAAGAGTCAGTGGAAATTGGTTTGAGAAATATAGCCATTAAAGGAACTTCTGAGCCTCTCAAAGACTCCCAATCTGTAAAATCATCCAAACAGATATAA 1620 0.4265 MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYVVQSKLGWGHFSTVWLAWDTLISRFVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYTDYRGVPLHMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLQSLINPSKDPRKSGASLILPNTKDKAASNNGTHQDNKILNGDPLKNQKKKVKRKAKVAQGFVGTETSEEAEDYKGPEQEDCGNDVKSSVESVEDKPDSSLSKDESTKNFEKDASQGSHSHMSSSRLMKKKLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELVGKMPPKIALGGRYSREFFNTHGDLRHISNLRFWPMDKVLMDKYNFSEQDTKDMVDFLAPILDFVPEKRPTAAQCLSHPWLNAGPRTLQPSITSAQPDAVNEELSERRKREAAEKESVEIGLRNIAIKGTSEPLKDSQSVKSSKQI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8135g00009 539 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Vium8135g00009 539 MobiDBLite consensus disorder prediction 494 509 - -
Vium8135g00009 539 MobiDBLite consensus disorder prediction 197 216 - -
Vium8135g00009 539 SUPERFAMILY Protein kinase-like (PK-like) 31 484 IPR011009 -
Vium8135g00009 539 MobiDBLite consensus disorder prediction 242 289 - -
Vium8135g00009 539 SMART serkin_6 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8135g00009 539 CDD STKc_SRPK 25 474 - -
Vium8135g00009 539 FunFam CMGC/SRPK protein kinase 22 121 - -
Vium8135g00009 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vium8135g00009 539 MobiDBLite consensus disorder prediction 480 509 - -
Vium8135g00009 539 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 7 498 - -
Vium8135g00009 539 MobiDBLite consensus disorder prediction 184 297 - -
Vium8135g00009 539 FunFam Serine/threonine-protein kinase SRPK-like protein 304 474 - -
Vium8135g00009 539 ProSiteProfiles Protein kinase domain profile. 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8135g00009 539 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Vium8135g00009 539 Gene3D Transferase(Phosphotransferase) domain 1 119 475 - -
Vium8135g00009 539 Pfam Protein kinase domain 311 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8135g00009 539 Pfam Protein kinase domain 36 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8135g00009 Vium-Chr8135 102918 106795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8135g00009 6 539 EF-hand Containing Proteins AT5G22840 62.639 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium8135g00009 Pkinase 7.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8135g00009 K08832 - gmx:100790060 931.784