Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8135g00003 ATGGAGGCGCCCGTAGCGAGACCGAGGGGGCGTCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAACGAAGCAAAGAAACTGGCGTTCATGGGGACACGACCTCCTGTGGCTTTGTTAGGAAGGTTCGTTTTGAAAAATTTCCCCAGGAATGGAGTGTTCCTGGGAAAAGTAGTGTACTATGAAAGCGGGCTTTATAGAGTTTGTTACGAGGATGGCGATTCAGAAGACCTTGACAGTGGCGAGGTCCGCTCTATACTAGTAAAAGAGGATGGAATTAATGGTGATTTGGCGGGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATGGTGGAAAGATCGGAATTGGTTCACAGAAGGGACCAGTTGAATCCATTAAGGAGGAATCTAAGGCTGGAGTGTGTGAATTGAACGATGGTGGATTGATGATTGAAAAAGATGAGGAGGAGGATGATGAAGATGTCAATTCTTTGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGGCCGAGACCCTGCCACCACCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGATCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACGAATTCACTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGACAGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCATCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTCCTTATACAATATTTGGTAGTCAGTGGACGCACATATTCTCATGAGTGGAAAACATTTTACCAAGAGGTGTCCACTGTGGAATATTATGTACTGCCGGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATTGATGATGATGGAGAAGATATCCTTCCTACAGAAGTTGGGCTTAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCGTCTGAGGATAAAGAAGCTACAAAGCTTGTTTCCGCTTCAAATGCTGTGAACCAACCTGGAAGCTTTATTTCATATTCCAGAGGTACAGAAAGCACTGAAGATGGTGATGTAGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTTGGGACCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGCGAACATCTACTTGTGCTGAATATTGGCAATGCTGAATCCTGTCTTAGGTACTACAATCAGAATGACATCCCCAAGGTTCTCCAAGTGCTTTATGCATCCTTGCAGTACAGACCAATATACCATGATATTTGCATGGCAGTGCTTCAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTAATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATATAAAGGAAGAGACTAAGCCTTCTCCTTTTTTACTTCCTCCTGTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCATTAACCTCTGCTAGTACAGCTTACTGTGACAATTTGGTGCCATCTCTTGATGCTTCATCAGTTTCCTCCCCAAGTTCTGCTCTTCAGTGTAATGGAAATGGTAGCAGTAGTGAGTACCCTGTTGTGACTACAAAGCTTCCTGAGAGCAGTAGGATCGAGTCCATCCTCTCAGCTGATTCAGCTTCTGTTTCTGTTAGTCATCATTCCAACATCAAGCATGGAAATTTTGATGGTAGGCCAACAGAGGTAGATCCTGGCAAGTGCTCTTCAGTACATGGTCAATTTAGTTATTATGGCCATGCAAACCATACAGGGTTTCCCATAAATATTTCTTTCCAAACCAAAGAAAGCACTCAAGCCAGTTTTGAAAAGTGTGAACGCAATGTAACCAATGGTTTTGCCTATATGGGTTTCTCCTATAAGCCTTTTTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCGGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTAACTGCCTCACGATTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCATTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTACAAAAGTGCTTGCTGGTTTTTCTCCTATAAAAAGTGCGGAGGGAGTACTCCCTAGTATTGCAACCTACATTATGTACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGAAGGCAATGGCGTACGCGAGTGGAACAGGCCTCAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGTCAATTTCTTTCTGTGGGGACTGGGTTAAGCTGATGGATGACTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCCACTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGACGAAGCTACAACTGAGGGTCGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCTATCTTGCCAAAATCCATGGTTAGAAAAGCAGCACGAGAAGGTGGCTCAAGAAAAATTTCTGCCATTTCTTATGCTGATGGCATTGAAATCCCCAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTACAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACCGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACACTAAACTGGTAGAGGGGAAAAATTGTTATGGGATAGTTTTTGGGAGTCAGAAACATCTTCCTTCTCGGGTGATGAAAAATGTTTTTGAAATAGAGCAAGATCCAAAAGGAAAAGAGAAGTATTGGTTTTCTGAAGCACGAATTCCTTTATATTTGGTGAAAGAGTATGAAGAAGGTAAGGGAAGCATGGCATATAATGAAGAGCAGCACTTGAATACTGCATCTGGGTTGCACAGAAAGCGGCTAAAAACTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGAGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTACCAAGTGTAATGCATGCCAAGGTTATTGTCATGAGGGTTGTTCCACAAGTCAAATAGTCTCTGCAAACGAAGTTGAGTACTTGACCACGTGCAACCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAAAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGAACAGTTTTGAAGAGATCAAGGCCTAGAACTCTTGATCAAGTACCGAAATCTTCCAAAACAAAGGCTAATAATCCCATGAAACAAGTTACTTCTGCGACGAGTTTGAAAAAAACAAAGGCTAAACGTTCTGAACAAGAACCAACTACTGGGATAAATGATAATGATCTTGACATGCAACAAGTTGCTTCTGTGGAAACTTCAGCTGCAAAACGCCATCGCAAAAATTGTTCTTGGGGCATTATATGGAAAAAGAAACATAATGAAGATTCAGACGATTTCATGCTCAGGAACATACTTTTAAAAGGGAGCTCAAACATACCAGGACTAAAACCTGTTTGTCACTTGTGTCGCAAGCCATATACGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGAGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCCAAGAAACAAGAGGGCAAAAGGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTCTGAAGCTGCTACTCCCGTCTTTCCTGTATATGATGATACTCCCACCTATTCTGCGGAGGATCCTAGTTATGTCTTTCCTGATGAGGATCCTACTCCCGTCTTTCCTGTTGAGGATGATCCTCTTTTTTTCTCTCTCACAAGTGTTGAACTGGTAACAGAACCCAAGATAGAAGGAGATATGGAGTGGAATGGTGTCTCTGTGCCAGGGCTTCAGAAACTACCAGTGAGAAGGAATGTTAAGAACGAGGGTGATGATGTTTCTTTTGAAGGTGGTGTACCTTTGGATGCTGAATTCTCTACATACGATGGTGAGACGGGTAATCTGTCCAATCCTGCGGAGGAATCTATACCTTTAGAATACACCTCTGGTGTTGACTTAGACAACAAGCTGCCGAATGACTCTGAAAATGTAAATTACGATGATTACATGGATTTCGAACCCCATACCTACTTCTCTGTAACAGAATTGTTGCAGTCAGATGATGGTGGTCAGTTTGAGGGTGTTGACATGTCTGAGGACTTGTCAGGATATATGGAAAATTCTAGCACCACCACCCTTATTCCTGAATCGTGCGATGCTAGTTTGGCCGATAAGTCAGCACCTACGACTTACACCGGCCATAGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTGATCTCTGTTGCGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCACCTTGGGTTGAATTACCATCGCTTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 5193 0.4296 MEAPVARPRGRPRKRRRNDEENENEAKKLAFMGTRPPVALLGRFVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRSILVKEDGINGDLAGRKEKLEELVSKNGGKIGIGSQKGPVESIKEESKAGVCELNDGGLMIEKDEEEDDEDVNSLSDSGTGLGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRQHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLIQYLVVSGRTYSHEWKTFYQEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNIRRESEVGIDDDGEDILPTEVGLRRVEPRYTFTSASEDKEATKLVSASNAVNQPGSFISYSRGTESTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMLGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNAESCLRYYNQNDIPKVLQVLYASLQYRPIYHDICMAVLQYWSVPESLLFNSVSSGANVNSANIKEETKPSPFLLPPVGEGNLMKEEYPLTSASTAYCDNLVPSLDASSVSSPSSALQCNGNGSSSEYPVVTTKLPESSRIESILSADSASVSVSHHSNIKHGNFDGRPTEVDPGKCSSVHGQFSYYGHANHTGFPINISFQTKESTQASFEKCERNVTNGFAYMGFSYKPFSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSATKVLAGFSPIKSAEGVLPSIATYIMYMEECLRGLVVGPFLSSIYRRQWRTRVEQASTFSAIKPLLLELEENIRSISFCGDWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSAIDEATTEGRPENFVWWRGGKFTKFIFQKAILPKSMVRKAAREGGSRKISAISYADGIEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNCYGIVFGSQKHLPSRVMKNVFEIEQDPKGKEKYWFSEARIPLYLVKEYEEGKGSMAYNEEQHLNTASGLHRKRLKTICKDIFFYLTCKRDNLDVESCSVCQMGVLIRDATKCNACQGYCHEGCSTSQIVSANEVEYLTTCNQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPRTLDQVPKSSKTKANNPMKQVTSATSLKKTKAKRSEQEPTTGINDNDLDMQQVASVETSAAKRHRKNCSWGIIWKKKHNEDSDDFMLRNILLKGSSNIPGLKPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSSVLSFKCCKCRRIKSPVCPYSDLKPKKQEGKRSRTKAKKEHSGADTDSGAISDMRESEAATPVFPVYDDTPTYSAEDPSYVFPDEDPTPVFPVEDDPLFFSLTSVELVTEPKIEGDMEWNGVSVPGLQKLPVRRNVKNEGDDVSFEGGVPLDAEFSTYDGETGNLSNPAEESIPLEYTSGVDLDNKLPNDSENVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSEDLSGYMENSSTTTLIPESCDASLADKSAPTTYTGHSCMQCSQMEPAPDLCCEICGILIHSQCSPWVELPSLGSWRCGHCREYGNN 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8135g00003 1730 Pfam DDT domain 196 252 IPR018501 -
Vium8135g00003 1730 CDD Tudor_AtPTM-like 41 88 IPR047365 -
Vium8135g00003 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 468 IPR013083 -
Vium8135g00003 1730 ProSiteProfiles Zinc finger PHD-type profile. 418 465 IPR019787 -
Vium8135g00003 1730 ProSitePatterns Zinc finger PHD-type signature. 421 462 IPR019786 -
Vium8135g00003 1730 Pfam PHD-finger 421 463 IPR019787 -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1248 1324 - -
Vium8135g00003 1730 PANTHER PHD FINGER FAMILY PROTEIN 37 1693 - -
Vium8135g00003 1730 SMART PHD_3 1190 1238 IPR001965 -
Vium8135g00003 1730 SMART PHD_3 1681 1725 IPR001965 -
Vium8135g00003 1730 SMART PHD_3 1379 1427 IPR001965 -
Vium8135g00003 1730 SMART PHD_3 420 463 IPR001965 -
Vium8135g00003 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1374 1433 IPR013083 -
Vium8135g00003 1730 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Vium8135g00003 1730 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1197 1227 IPR017896 -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1440 1462 - -
Vium8135g00003 1730 SUPERFAMILY FYVE/PHD zinc finger 393 464 IPR011011 -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1248 1273 - -
Vium8135g00003 1730 SUPERFAMILY FYVE/PHD zinc finger 1378 1433 IPR011011 -
Vium8135g00003 1730 CDD PHD2_CHD_II 421 462 - -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1282 1303 - -
Vium8135g00003 1730 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 341 IPR028942 -
Vium8135g00003 1730 SMART testlast3 195 255 IPR018501 -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 146 179 - -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1 25 - -
Vium8135g00003 1730 MobiDBLite consensus disorder prediction 1440 1471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8135g00003 Vium-Chr8135 29698 43121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8135g00003 285 554 EF-hand Containing Proteins AT5G22760 48.727 9.69e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium8135g00003 DDT 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8135g00003 - - gmx:100796377 2363.96