Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8135g00002 ATGGAACAACACAATCTTTCAGACACTGATCAGTTTTTGACTCTGGGCGCCACATCGGACGAGTCACAGAGTCCTAAGGAAGCAGCGCCGTATGTCAGCGCCGCCGACAATAACAACAATGCTGTTAGCGCAGTTAACGTTGCAACTGGTCCTGGTTCTGGTTCGGAGCTGGTTGTGGCCGTAGCAAACTCCGATGCTGTAGGTTCGGGATTGGTGGTGAAGCGAGGAAGGGGTAGGCCTCGGAAGAGCGAGGATGTCGGGAGCACGGCGTCTCCGTTGATGGCGGTGGTGCCGCCGCCGCTGCCAGGTCTTTCCGATCAGACCAAGAGAGGAAGGGGACGCCCTCGTGGCTCTGGTAAACTGCAGGTTATAGCTTCCATTGGTGGGTTTCTGGCAGAAACAGCAGGGCGAAGCTTCATACCTCATGTTCTGACTGTGCAAATTGGAGAGAATTTGGTTGAAACGATAATGTCATTTTTTGAGAAAGGCCCGCTATCGGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTGACCATTCGTGAACATGCTGGTTCCAATCATATTACGAGATTTGAGGGTACCTTTGAGATACTGTCATTATCAGGAGCTTGTACCTTCGTTGGTGGTATTAATGGTCCAGTTCGTACAGGTGGATCGTTGAGCATTTCAATGGCTAGATCTGATGGAAATGTTTTGGGGGGAATTCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAGCTTGTAATGGCCACTTTCAAGCAAAACATCAGCAGTCAATTCAAGAGGAAACAATTGTTAGAATTTTCGAATGGCCCCCTTATGCTGGAAAGTCCAGATTCAGAAAGACGTAAAATGAAAGTTCCAAAGTTGACAGAAGGAGAGAAAAGTTGTTCTTCACAACCAACAGAACTTGTTCGAACAACAGTACCTAGTTGTGTAGCAGATAGTGTGTTTTCTGGCACACCAAATGGAGTAGCAGATAGTGCTACTAATATGCACTCTGCATGTGTTATTGGTGTTGATATGGACAACCAGGCACCACAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGAAGTGAATGCAAATGTTATAGAGTTATGA 1119 0.4683 MEQHNLSDTDQFLTLGATSDESQSPKEAAPYVSAADNNNNAVSAVNVATGPGSGSELVVAVANSDAVGSGLVVKRGRGRPRKSEDVGSTASPLMAVVPPPLPGLSDQTKRGRGRPRGSGKLQVIASIGGFLAETAGRSFIPHVLTVQIGENLVETIMSFFEKGPLSVCILSATGAISNVTIREHAGSNHITRFEGTFEILSLSGACTFVGGINGPVRTGGSLSISMARSDGNVLGGILESALVAACPIQLVMATFKQNISSQFKRKQLLEFSNGPLMLESPDSERRKMKVPKLTEGEKSCSSQPTELVRTTVPSCVADSVFSGTPNGVADSATNMHSACVIGVDMDNQAPQSASDDSDQKTSAEVNANVIEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8135g00002 372 Gene3D - 141 272 - -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 1 37 - -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 347 366 - -
Vium8135g00002 372 PRINTS AT-hook-like domain signature 74 84 IPR017956 GO:0003677
Vium8135g00002 372 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Vium8135g00002 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 256 IPR005175 -
Vium8135g00002 372 CDD DUF296 141 255 IPR005175 -
Vium8135g00002 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 344 IPR039605 GO:0003680
Vium8135g00002 372 SMART AT_hook_2 74 86 IPR017956 GO:0003677
Vium8135g00002 372 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Vium8135g00002 372 MobiDBLite consensus disorder prediction 75 119 - -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 278 305 - -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 1 26 - -
Vium8135g00002 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 260 - -
Vium8135g00002 372 ProSiteProfiles PPC domain profile profile. 136 276 IPR005175 -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 280 294 - -
Vium8135g00002 372 MobiDBLite consensus disorder prediction 346 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8135g00002 Vium-Chr8135 8123 11596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8135g00002 73 267 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 41.000 1.19e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8135g00002 - - gsj:114378162 408.683