Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00060 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTTCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGAGATTACAATGTTTTGGTGATGGATCTGCTGGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTGAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCAGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAAAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAGGCCCTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTTCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCATACCTCAAAAGGATATTTCGGGACCTTTTTATACGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTAGCCACTCCTCCAACACGAGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCACCTGCTGTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCGAGGCGGGTTGCTGTTTCTGGTAGCCGTGATGCATTTGTTGGTACTGAGTCGGATATCCGTACTCGCACAGCTGAAGCTAGCTCTGGAGTAGCACACAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTATCATCCGGGAGAAACGCTTCTCATGTGAAAAATTATGACTCTGTACTCAGGGGCATGGAAGGTTTGCAGTTAGAGAATGATGAGAGGACCCATTATTAA 1365 0.4293 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPAVVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTRTAEASSGVAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDSVLRGMEGLQLENDERTHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00060 454 FunFam Putative Casein kinase I 1 85 - -
Vium812g00060 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium812g00060 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vium812g00060 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium812g00060 454 MobiDBLite consensus disorder prediction 403 428 - -
Vium812g00060 454 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Vium812g00060 454 MobiDBLite consensus disorder prediction 303 322 - -
Vium812g00060 454 FunFam Casein kinase I isoform delta-like 1 308 - -
Vium812g00060 454 PANTHER CASEIN KINASE-RELATED 9 386 - -
Vium812g00060 454 MobiDBLite consensus disorder prediction 386 428 - -
Vium812g00060 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium812g00060 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium812g00060 454 MobiDBLite consensus disorder prediction 303 346 - -
Vium812g00060 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium812g00060 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00060 Vium-Chr812 359479 364974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00060 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.27e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium812g00060 Pkinase 9.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00060 K02218 - gmx:100811567 868.611