Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00051 ATGTACGGTGACGCCACCAACTGGGACGAAAATGCATACAGGGAAACGGTTCTCAAGGAGAGGGAAATCCAAACGCGAACCGTTTTCCGAACCGCTTGGGCTCCACCCTACAATCTCGACACTCTCCTTGTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCGCCGCCTCTAAGCTAAAAAACCCTTTTGGTTTTGTTAATGCGGATACAGATAAGTTGTCAGTTGAACCTAATTGCTTCATTCAAGCGCATTATGGACCTGCGTATGATGTCAAATTTTATGGTGACGGTGAAGATGCTTTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAAATGGAAAGAATTTTCAAGCGCTCATTATTCTGTTTCTTCACAAGGAAATGATACCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCTTGGGGCGCACTTTCACCTATTCCTGAGAATAATGCTCTTGCTGTTAATACTCAGGAGGGATCAGTTTTTGCTGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGCAAATTGAAAATGGTATTCAAGGGGCACATGGAGTATTTGCATTGTATAGTTGCACGCAACTCGTCCAATCAGATCATAACAGGTTCGGAGGATGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAAGTAATTGATCCAGTAAAACATTTGAAGTTGAAGGGATCTGCTTCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGTTGGTTGGCTTGCAGTAGTGGACGAAATATATCACTTTGGAACCTGCCTGCTTCCGAATGCGTATCAAAAATTCCAACGCGTGCTACTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTGCTCAATCGCTTTGACATGAATGGCACGATCCTTTCACAAATACAGTGTGCTCCTTCGTTGACATCCGTCTATTCACATATTTTATATTTTAATTTATTGTTTTTATTTAAAAAAAATTTTTCTTTTTCTTTTTTTGTTTTTGCAGTCATGGCTGGACTTGCGCCTGAGGGGTCACAGTTCGATGCGAACAAATTTGATTCCAAAATGAATGACTTGCTAACTTCTGATGGACAGGATTTCTTCACATCCTATGATGAGGTTTATGAGAGTTTTGATGCTATGGGACTGCAGGAGAATCTTCTGAGAGGCATTTACGCATATGGTTTCGAAAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCCACTTTCTGCTCCGGTATTCTGGAGCAACTTGACTATAGCTTGACGCAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAAAAGGTTATGCGGGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTCCGTGAAGATCAACGCATATTATCTAGCGGTGTTCATGTCGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTTCGTAGGCAATCACTCCAACCAGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTTTCCCGAGGTTTTAAGGATCAGATATATGATATATTCCAGCTGCTGCCATCTAAGATTCAAGTGGGTGTTTTCTCAGCCACAATGCCTCCTGAGGCCCTTGAGATCACGAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAACGGGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGAGAAAGAGGAATGGAAGCTGGACACCCTCTGTGATCTTTATGAGACGTTAGCAATCACCCAGAGTGTCATTTTTGTGAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAAATGAGAAGCCGTGACCACACTGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGATCTGGTTCTTCCCGTGTCTTGATTACTACTGATCTTTTGGCCCGTGGTATCGATGTCCAACAAGTGTCACTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTGCATCGTATTGGTCGTAGTGGAAGGTTTGGCAGGAAGGGTGTGGCTATCAACTTTGTCACAAAGGATGACGATAAAATGCTGTTTGACATCCAGAAGTTTTATAACGTGGTTGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTAA 2328 0.4381 MYGDATNWDENAYRETVLKEREIQTRTVFRTAWAPPYNLDTLLVASSDGSVASYSISSSIAASKLKNPFGFVNADTDKLSVEPNCFIQAHYGPAYDVKFYGDGEDALLLSCGDDGRIRGWKWKEFSSAHYSVSSQGNDTKPVLDVVNPQHKGPWGALSPIPENNALAVNTQEGSVFAASGDSCAYCWDVETGKLKMVFKGHMEYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDPVKHLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECVSKIPTRATVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSLTSVYSHILYFNLLFLFKKNFSFSFFVFAVMAGLAPEGSQFDANKFDSKMNDLLTSDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILEQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDKMLFDIQKFYNVVVEELPSNVAELL 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00051 775 Gene3D - 4 244 IPR015943 GO:0005515
Vium812g00051 775 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Vium812g00051 775 Gene3D - 611 775 IPR027417 -
Vium812g00051 775 FunFam Eukaryotic initiation factor 4A-III 610 775 - -
Vium812g00051 775 SUPERFAMILY WD40 repeat-like 24 329 IPR036322 GO:0005515
Vium812g00051 775 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 549 557 IPR000629 -
Vium812g00051 775 SMART helicmild6 655 736 IPR001650 -
Vium812g00051 775 Gene3D - 392 610 IPR027417 -
Vium812g00051 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Vium812g00051 775 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 336 IPR042626 -
Vium812g00051 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 433 603 IPR014001 -
Vium812g00051 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Vium812g00051 775 Gene3D - 245 351 IPR015943 GO:0005515
Vium812g00051 775 CDD DEADc_EIF4A 406 604 - -
Vium812g00051 775 Pfam Helicase conserved C-terminal domain 628 736 IPR001650 -
Vium812g00051 775 SMART WD40_4 241 279 IPR001680 GO:0005515
Vium812g00051 775 SMART WD40_4 80 121 IPR001680 GO:0005515
Vium812g00051 775 SMART WD40_4 14 55 IPR001680 GO:0005515
Vium812g00051 775 SMART WD40_4 282 318 IPR001680 GO:0005515
Vium812g00051 775 SMART WD40_4 153 188 IPR001680 GO:0005515
Vium812g00051 775 SMART WD40_4 191 230 IPR001680 GO:0005515
Vium812g00051 775 SMART ultradead3 421 618 IPR014001 -
Vium812g00051 775 CDD SF2_C_DEAD 615 745 - -
Vium812g00051 775 Pfam DEAD/DEAH box helicase 427 588 IPR011545 GO:0003676|GO:0005524
Vium812g00051 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 402 430 IPR014014 GO:0003724
Vium812g00051 775 Pfam WD domain, G-beta repeat 243 279 IPR001680 GO:0005515
Vium812g00051 775 Pfam WD domain, G-beta repeat 193 230 IPR001680 GO:0005515
Vium812g00051 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 756 IPR027417 -
Vium812g00051 775 FunFam Eukaryotic initiation factor 4A-II 390 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00051 Vium-Chr812 318302 335347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00051 363 775 Eukaryotic Initiation Factors Gene Family AT1G72730 87.923 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00051 K03257 - qsu:112002178 1253.81