Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00047 ATGTCCACACCACCGTTGCTGAGATCGGTTGCCGTCGCTGTGAGCGGCGGCTCCAGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTGGTCCCTCAAGCCGACAGGTTCATCTTAGTTCACGTTATCCCTCCAATCACCTCAATTGTCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCAGACGCCGATGTTTTTGCAGCTTATGTAGATGATGTGAAGCAAAAATCTGAACAAATCTTCGTCCCGTTCAAGAAACTCTGCGGCTCAAACACTATGGAAACAGTACTGCTAGAAGATGACAATGTGGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCTGGAATACCAACTACCAGCCTAAGATGTGCTCCAGACAGTTGTGATGTGTATGTTGTAGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATCTGTCATATTCACATGCTCGTGAGGCTAGCCCAAGTTACTTCATGTCTACTAAAGTGAATAAAGTAGACAATGACGCTGGCATTGACAGAGAAATGTCGGGAATCAGTTCATCCACAACAGAGTCTAAATTCCTAAAGAATTTCAGATTTTTATCAATATCCGACCATGGCTACATTGGTCTGCAAACAATTAGTCGCAGGGATTCTTTTGAAAATTCTTCCAAAAGTGATAATCCAGAAAACTGTGGAAATGATATTGAAATGATTAGCCTCCACTCTTTTGATTCCATTGCTTCTGCACAACGTAAACAGTTAGCCATGCAAGAAGAAGTAGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGAGCTGGTTCAAGCTCAAAACCAGGCCCTCATACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCAAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTACTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGACATCAAGATAGCCACAAAATTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGCAAAGTTTACAAGTGTGATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTGCATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCATCAATTCCATGGTTTTTTCGATTTCGCATAGTTTTTGAGATGGCCTGTGGGCTTTCATTCTTGCATAATTCGAAGCCAGAACCGATTGTACACCGAGATATAAAACCTGCCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCATTGCAGAAGTTGCTCCTGACAATATTACAGAGTATCGAGAATCAGTCCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTCCGACCAAAATCAGATATATATGCATTTGGAGTTATAACTCTCCAATTAATAACTGGTCGCCATGCACGTGGACTCATTATGATTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGACTTTTTAGATACATCAGCTGGAGATTGGCCATTGGATGAGACAATGGAATTGGCTCAAGTTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTACTCGAAAGATTTTCTAATGCGGCAAATGCCAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAGACACAATGTGTCACCGATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTCACCTTTTGA 2289 0.4155 MSTPPLLRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVIPPITSIVTPTEEYIPVSEADADVFAAYVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALLSFISESGVQTLVLGSDSSNFITRKLKGPGIPTTSLRCAPDSCDVYVVARDRIVSKLADLSYSHAREASPSYFMSTKVNKVDNDAGIDREMSGISSSTTESKFLKNFRFLSISDHGYIGLQTISRRDSFENSSKSDNPENCGNDIEMISLHSFDSIASAQRKQLAMQEEVERLQLELQNTIAMYKQVCEELVQAQNQALILSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCDLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNRKPSIPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPANILLDRNYVSKISDVGLAKLIAEVAPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDIYAFGVITLQLITGRHARGLIMIVEDAIRNGSFRDFLDTSAGDWPLDETMELAQVALKCTALRCRDRPELDTEILPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSRHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00047 762 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 140 - -
Vium812g00047 762 CDD RING-Ubox_WDSUB1-like 692 746 - -
Vium812g00047 762 ProSiteProfiles U-box domain profile. 690 762 IPR003613 GO:0004842|GO:0016567
Vium812g00047 762 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Vium812g00047 762 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Vium812g00047 762 Coils Coil 334 380 - -
Vium812g00047 762 CDD STK_N 9 161 - -
Vium812g00047 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 760 IPR013083 -
Vium812g00047 762 Gene3D HUPs 7 159 IPR014729 -
Vium812g00047 762 Coils Coil 267 308 - -
Vium812g00047 762 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium812g00047 762 Pfam U-box domain 692 757 IPR003613 GO:0004842|GO:0016567
Vium812g00047 762 Gene3D Transferase(Phosphotransferase) domain 1 481 690 - -
Vium812g00047 762 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium812g00047 762 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Vium812g00047 762 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 380 480 - -
Vium812g00047 762 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Vium812g00047 762 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Vium812g00047 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Vium812g00047 762 SUPERFAMILY RING/U-box 685 757 - -
Vium812g00047 762 PANTHER OS02G0152300 PROTEIN 10 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00047 Vium-Chr812 291589 297001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00047 5 758 Plant U-box Gene Family AT5G57035 53.197 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium812g00047 PK_Tyr_Ser-Thr 4.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00047 - - vun:114178082 1419.06