Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00038 ATGGAGGAAATATCTTCAAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAAGAGTCTGCAGTGACAACTCACATGGAGATAACTGGGCTGAAGCTTATGGCAAATACAGCAGCGGCTGCTTTGATGTTAAATCCTGCAGTGGAGTGTTGTCAGTCATATTCTGTTGGAAGTGAAAGCCATGCAGATGTAAGTCTGCAGCACCAGATCACGGTATCTGCGGAGGTAAAAGAGAATCAAGTTGGGGATGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTTTTGAATGAAACCCATCATAAGCCTATAAAGGAAGATGAAGTAATGTTAGCTGTGGATTTTCACTGTCTTCATAGTTCAAGCTCTCAGTCTGTGGCTAATGGCCAAAGTGATCCTTGTAGGGAGGAAGCGGTGCCGTTGAAGACTAGTTATTCTGAAATAGAATCACCAATCATCATGAATGTTGATGATGATGTTCATGGCAAGTCTGGAGTAAACGAACCGTGTTCATCGATGAAGTCAGTGGAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAAATCATCTACTGTGCTTCTTGACCAGTTGTCTGGGGAGAATAAAGCATGGAGAACGAACAACAAAAATGCTTTGGAATTGAATAGTGGTCCTCTGTGGGGTTATTCATCAATTTGTGGAATGAGACCGGAGATGGAAGATGTTATTTCTGTTCAGCCTCAACTTTTTCAAGTTCCTTCACAGATGCTGATGAATGACCACGTAAATGAGAACGAAAAACAGACACTAGCCCACTTTTTCGCCGTCTACGATGGACATGGGGGCCTTCAGGTTGCTAACTACTGCCAGGAACGTCTTCATTCAGCATTGATTGAGGAGATTGAGGCTGCACAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCATTGGAAGAAAGCATTCATCAATTGTTTTCAGAGAGTAGATGATGAGGTTGGAGGAACTGGTGCAAGTAATAATGGAAACAACAGTGGTGGATCTGAGTCTAGTATTGAACCTGTTGCTGCTGAGACTGCTGGTTCCACCGCAGTTGTCGCTATTTTAAGTCAAACCCTCATAATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTGTACCGTGGAAAAGAGGCCATGCCACTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGCGGGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGGGATAGATATCTTAAACCATGGATAATTCCAGAACCTGAAGTGAATATTGTGCGTAGAGAGAAAAATGACGAATGTCTTATTCTAGCAAGTGATGGTTTGTGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCTAGGAAGAGAATCCTTCTTTGGCACAAAAAGTTTGGTGAAAACGGAGCAACAGGACATGGCGAAGGAGCTGATCCTGCTGCTCAGTCTGCTGCAGAGTATCTAACAAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTCATAGACTTAAAGGCTCAAAGAAGAATTAAGAGGAAGCCTTAA 1686 0.4288 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECCQSYSVGSESHADVSLQHQITVSAEVKENQVGDALVSEMVIECESNWVLNETHHKPIKEDEVMLAVDFHCLHSSSSQSVANGQSDPCREEAVPLKTSYSEIESPIIMNVDDDVHGKSGVNEPCSSMKSVENTVSVAMDITSEDQSGSDESDPKSSTVLLDQLSGENKAWRTNNKNALELNSGPLWGYSSICGMRPEMEDVISVQPQLFQVPSQMLMNDHVNENEKQTLAHFFAVYDGHGGLQVANYCQERLHSALIEEIEAAQSSLAETNGRDDWQDHWKKAFINCFQRVDDEVGGTGASNNGNNSGGSESSIEPVAAETAGSTAVVAILSQTLIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVARKRILLWHKKFGENGATGHGEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRRIKRKP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00038 561 SMART PP2C_4 228 549 IPR001932 -
Vium812g00038 561 MobiDBLite consensus disorder prediction 349 370 - -
Vium812g00038 561 FunFam Protein phosphatase 2C 16 226 561 - -
Vium812g00038 561 CDD PP2Cc 240 551 IPR001932 -
Vium812g00038 561 ProSiteProfiles PPM-type phosphatase domain profile. 238 551 IPR001932 -
Vium812g00038 561 SUPERFAMILY PP2C-like 234 552 IPR036457 -
Vium812g00038 561 Gene3D - 225 561 IPR036457 -
Vium812g00038 561 Coils Coil 213 233 - -
Vium812g00038 561 Pfam Protein phosphatase 2C 257 544 IPR001932 -
Vium812g00038 561 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Vium812g00038 561 PANTHER PROTEIN PHOSPHATASE 202 551 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00038 Vium-Chr812 242969 246738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00038 171 561 PP2C-type Phosphatase Gene Family AT4G26080 54.156 8.63e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00038 K14497 - gmx:100789207 885.945