Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00019 ATGGGCGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCGCCCTCTTCCTCGGACAAGTCCAGCACAACCATGTTATACTATGGGCTTGTGGTGGTGGGGGTTGCAGCGGCGGCATTAGCCCTGTACAACTTCATAATCATCAGGAGGAGCAGAAGGAGGCACGTGCAATCAGAAGGCGAAGGGGGAAATGGGTTGGTGGAGGTGGTGAGTGAAAGTAGAATAGAGAACTCGGTGTCAAGCTTCAAGTACAAGAAAGAAGGAGTTGTGGGTTATGATGATGAATGCTCAGTTTGCTTATCTGGTTTTGAAGAAGGAGAAGAAGTTCGGAAGCTTCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGACTGCCCAATTTGTCGAACACCTGTGGTGCGTTTCTCTCAGACATTGCTGGAATGA 456 0.5022 MGDFQGPFIVSPPPSPSSSDKSSTTMLYYGLVVVGVAAAALALYNFIIIRRSRRRHVQSEGEGGNGLVEVVSESRIENSVSSFKYKKEGVVGYDDECSVCLSGFEEGEEVRKLPQCKHWFHAPCIDMWLYSHLDCPICRTPVVRFSQTLLE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00019 151 CDD RING-H2_EL5-like 96 139 - -
Vium812g00019 151 MobiDBLite consensus disorder prediction 1 20 - -
Vium812g00019 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
Vium812g00019 151 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vium812g00019 151 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 143 IPR044675 -
Vium812g00019 151 SMART ring_2 97 138 IPR001841 -
Vium812g00019 151 SUPERFAMILY RING/U-box 90 144 - -
Vium812g00019 151 Pfam Ring finger domain 95 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00019 Vium-Chr812 115947 117177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00019 31 143 C3H Transcription Factor Family AT5G17600 39.706 1.79e-20 84.3