Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00011 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCCGAGAATACATTACAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAACAGCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTTAAAGACGGTCACAAAACCTCATCAACCTTTTGTCGCAGACCAAGCAATGAAAACAGCACACGGAATCCAATGCCCCACTTGGCCAATCCTAAACCAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTTCCCAACAAGTCCGAGGAAGAAGAAAAGGTTGTTGCGGATGCTGTGATGAGTGTCCAGATGGAACTCACTACCAACAACAATGGCTTCTTGTCGTTTCCCGATGAAGAAAAACAGCTCTCGGCAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTCTCTGATCTTCTCGACTCCGATTTCAACAATATCTGCAACGACCAGCACTTATTCTCTCCTTGTTCGGACCAACCTTTTCATCTAGTCTGCTCCCAAGAACTTCTCAACAACTGCACGCAAACCAATTTTGCAGACCAAAACAGTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACTGGGAAAATCATAA 894 0.4463 MGRSPCCSKEGLNRGAWTAHEDKILREYITVHGEGRWRNLPKTAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSSTFCRRPSNENSTRNPMPHLANPKPDSHLVRTKATKCTKVFFPHPSMLQLPNKSEEEEKVVADAVMSVQMELTTNNNGFLSFPDEEKQLSADMLTDFNVGDICFSDLLDSDFNNICNDQHLFSPCSDQPFHLVCSQELLNNCTQTNFADQNSASNNLHSFISFLDTTEETLGKS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00011 297 FunFam MYB-related transcription factor 13 66 - -
Vium812g00011 297 SMART sant 66 114 IPR001005 -
Vium812g00011 297 SMART sant 13 63 IPR001005 -
Vium812g00011 297 CDD SANT 16 61 IPR001005 -
Vium812g00011 297 Gene3D - 70 139 - -
Vium812g00011 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium812g00011 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium812g00011 297 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vium812g00011 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 190 - -
Vium812g00011 297 MobiDBLite consensus disorder prediction 125 141 - -
Vium812g00011 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium812g00011 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium812g00011 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium812g00011 297 FunFam Transcription factor TT2 70 140 - -
Vium812g00011 297 Gene3D - 14 66 - -
Vium812g00011 297 CDD SANT 71 112 IPR001005 -
Vium812g00011 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium812g00011 297 MobiDBLite consensus disorder prediction 119 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00011 Vium-Chr812 83300 84803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00011 1 179 MYB Transcription Factor Family AT4G38620 56.906 8.20e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium812g00011 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00011 K09422 - gmx:100802704 418.313