Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium812g00009 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCTCCTGATCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCACGGCTCCTCCCTCACCAGTCTCAGCACTTTGGGTGGAACTATTTGCCAATGGGATTGGGGAGGAAAATAGACCCTGAGCCTGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACCACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCGCCCCACTCCTTCCTCTATCATCACCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGATAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACCATAAGCTCTTCTTCCTCATCAAAACAGAGGAGCTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCCCAGCAAGATCAGGCTTGCTACATATCAGGAAGCGGCAGTGGTATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCAACCACCTAG 1047 0.4776 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQACYISGSGSGIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium812g00009 348 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium812g00009 348 MobiDBLite consensus disorder prediction 326 348 - -
Vium812g00009 348 Pfam WRC 78 120 IPR014977 -
Vium812g00009 348 MobiDBLite consensus disorder prediction 146 178 - -
Vium812g00009 348 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vium812g00009 348 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium812g00009 348 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium812g00009 348 PANTHER GROWTH-REGULATING FACTOR 5 8 337 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium812g00009 Vium-Chr812 58106 60652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium812g00009 7 120 GRF Transcription Factor Family AT3G13960 71.930 1.21e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium812g00009 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium812g00009 - - gmx:100783524 599.356