Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8126g00005 ATGTTTCGCCGAAATCTTAGCAGGGTTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGAAAGTCAGTTCAGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTACATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACAGCCATATTGTTAGCCCGTGCTTTAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTCATATCACTGGCCCTGGCTTCGGTTGGATTTGTTGGAACACTGTCTCCCTCAATTACCAAGTTGAAATATTTGGTTAGCGTGGAATTGCAGAACAACAATCTTTCAGGACCCTTGCCCGATTACATTTCCTACTTGAAAGACCTACAATATCTAAATCTTGCTGACAATAATTTTAATGGTTCTATACCAGATAAATGGGATGAACTATCCAATCTAAAGTATCTGGATCTTTCGTCTAATGGTCTTACTGGAAGGATCCCAATGCAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGACACGCACCTTCAGTGTGGTCCTGGCTTCCAGCAGACTTGCACTTCTAAATCTGAAAATCCAGATTCAACCCACAAATCAAAACTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCGTAGGAACAAAAGGGACGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGCAAAATCTCCCTTGGGCAATTGAGAAGATTTTCTTGGCGTGAACTACAGCTTGCCACCAAAAATTTCAGTGAAGGCAATATAATTGGTCAGGGTGGTTTTGGAAAAGTGTACAAAGGAGTACTCTGTGATAACACCAAAGTAGCTGTGAAGCGCCTCGTTGATTATCACAACCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAGAAACCTCTTAAGACTGATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTCAGTGTAGCTTATCGACTGAGAGAATTAAAACCAGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGTATTGCTTTTGGCACGGCTCATGGTTTGGAGTACCTACACGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGACTTTGGGCTGGCCAAGCTGGTTGATGCAAGGATTACTCATGTCACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACAGGAAAATATTCAGAGAAGACTGATGTATTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTCATCGATTATGTGAAAAAGCTGCTGAGAGAAAAAAGGTTGGAGGACATGGTGGATAGAAATTTGGAGAGGTATGATCCAAAGGAAGTTGAGACCATTCTTCAGGTTGCATTGCTTTGCACCCAAGGGTACCCTGAGGATCGTCCAAGCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGATTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCCAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACACTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1788 0.4273 MFRRNLSRVPLKILTRWLIFLTILKVSSAIKDPDVEGEALLDLLHFLNDSNKQITDWDSHIVSPCFSWSHVTCRNGHVISLALASVGFVGTLSPSITKLKYLVSVELQNNNLSGPLPDYISYLKDLQYLNLADNNFNGSIPDKWDELSNLKYLDLSSNGLTGRIPMQLFSVPMFNFSDTHLQCGPGFQQTCTSKSENPDSTHKSKLAKIVRYASCGAFALLCLGAILTYRHHQMRRNKRDVFVDVSGEDESKISLGQLRRFSWRELQLATKNFSEGNIIGQGGFGKVYKGVLCDNTKVAVKRLVDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRELKPGEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARITHVTTQVRGTMGHIAPEYLSTGKYSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDMVDRNLERYDPKEVETILQVALLCTQGYPEDRPSMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8126g00005 595 SUPERFAMILY L domain-like 37 172 - -
Vium8126g00005 595 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Vium8126g00005 595 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 34 193 - -
Vium8126g00005 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8126g00005 595 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Vium8126g00005 595 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vium8126g00005 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Vium8126g00005 595 Gene3D Ribonuclease Inhibitor 33 203 IPR032675 -
Vium8126g00005 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vium8126g00005 595 SUPERFAMILY Protein kinase-like (PK-like) 251 547 IPR011009 -
Vium8126g00005 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Vium8126g00005 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8126g00005 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8126g00005 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Vium8126g00005 595 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Vium8126g00005 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8126g00005 Vium-Chr8126 18308 23892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8126g00005 18 590 Receptor kinase-like Gene Family AT5G65240 55.390 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium8126g00005 Pkinase 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8126g00005 - - gmx:100800886 1103.97