LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8126g00002	ATGAGCAGTCCTCCTGTGAGTTCGTCGGCCGTAGCATACGAAGCATGGACAAGCCTGGCAGTGCCGGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTGTCAGCCACGTTGGTGGGGATTCAAAGCGTGCCGGGCCTCGTCATTCTCTACGGAAGCATAGTCAAAAAGAAATGGGCCGTCAACTCCGCCTTCATGGCTCTCTACGCTTTTGCGGCGGTCGTCATCTGCTGGGTCACCTGGGCTTACAAGATGTCCTTCGGGGAGAAGCTGCTGCCCTTCTGGGGCAAGGCCGGGCCGGCGCTGGGCCAGAAGTTTCTCATAAAGCAGGCGGCCCTCCCCGCCACACCGCACCACTTCAGTAACGGCGCGTTGGAGACCGCCGAGATCGAACCCTTTTACCCCATGGCTACCATGGTCTGGTTCCAGTGCGTGTTTGCCGCCATTGCTCTTGTCATCTTGGCCGGCTCCGTTCTGGCTCGGATGAACTTCAAGGCCTGGATGATGTTCGTGCCGCTCTGGCTGACCTTCTCTTACACCATCGGCGCCTTCAGCCTGTGGGGCGGAGGCTTCTTGTTCCATTGGGGTGTCATGGATTACTCTGGCGGTTACGTCATTCATCTCTCTTCTGGGATTGCTGGTTTCACTGCAGCCTATTGGGTGGGGCCGAGATCCAAGAGGGACAGAGAGAGGTTTCCGCCCAACAATGTGTTACTGATGTTGGCAGGTGCGGGGCTGCTGTGGTTGGGATGGGCGGGTTTCAACGGAGGAGATCCGTACGCGGCAAACACGGACTCATCGATGGCGGTGCTGAACACCAACATTTGCGCCGCCACCAGCCTCCTCGTATGGACCTGGTTGGACGTTATTTTCTTCAAAAAGCCCTCAGTCATCGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCTGCGATAGTGATGGGAGTGGTTTCAGGAAGTGTGCCATGGTACAGCATGATGGTGTTGGGAAGAAAGTTGAAAATATTTCAAATGGTTGATGACACACTTGCAGTCTTCCACACTCATGCTGTGGCTGGTCTTCTTGGAGGAATACTCACTGGTCTATTTGCCGAGCCAAGCCTAAGCACACTCTTTCTTCCTGTCACCAATTCCAAAGGAGGAGTCTATGGAGGCCCTGGAGGAATCCAGATTCTCAAGCAAATCGTCGGAGCTCTCTTCATCATTGGCTGGAACCTTGTGGCCACTTCGATCATCTGTGTCTTTATCAGTTTCATAGTTCCACTCAGAATGACAGAGGAAGAACTTCTCATCGGGGATGATGCAGTTCATGGGGAAGAGGCTTATGCACTTTGGGGTGATGGAGAGAACCTTAGCCTCTACAAAGATGATACCACACACCATGTTACGGTCTCTAGTGGTGCCACTCAAGTCGTCTGA	1458	0.5398	MSSPPVSSSAVAYEAWTSLAVPDWLNKGDNAWQMVSATLVGIQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAALPATPHHFSNGALETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVVSGSVPWYSMMVLGRKLKIFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPSLSTLFLPVTNSKGGVYGGPGGIQILKQIVGALFIIGWNLVATSIICVFISFIVPLRMTEEELLIGDDAVHGEEAYALWGDGENLSLYKDDTTHHVTVSSGATQVV	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8126g00002	485	Pfam	Ammonium Transporter Family	31	455	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vium8126g00002	485	Gene3D	Ammonium transporter AmtB like domains	5	458	IPR029020	-
	Vium8126g00002	485	NCBIfam	ammonium transporter	29	455	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vium8126g00002	485	SUPERFAMILY	Ammonium transporter	24	437	-	-
	Vium8126g00002	485	PRINTS	Rhesus blood group protein signature	325	343	IPR002229	GO:0005886
	Vium8126g00002	485	PRINTS	Rhesus blood group protein signature	239	257	IPR002229	GO:0005886
	Vium8126g00002	485	PRINTS	Rhesus blood group protein signature	270	292	IPR002229	GO:0005886
	Vium8126g00002	485	PRINTS	Rhesus blood group protein signature	144	160	IPR002229	GO:0005886
	Vium8126g00002	485	FunFam	Ammonium transporter	12	458	-	-
	Vium8126g00002	485	ProSitePatterns	Ammonium transporters signature.	200	225	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Vium8126g00002	485	PANTHER	AMMONIUM TRANSPORTER MEP2	16	464	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8126g00002	Vium-Chr8126	12151	15587	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8126g00002	137	475	Inorganic Solute Cotransporters	AT2G38290	71.386	2.73e-167	474

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8126g00002	K03320		-	gmx:100785993	909.057