Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8122g00001 ATGGCAGACAGTGTAGTTACCTTTGTTTTAGATCACTTAGCCCAGCTTGCGGCCCGGGAAGCTAACTTGCTGTATGGCGTGGAGGATAGAGTCCAGTCTCTCCAGTACGAACTTGAACTTATCAAAGAGCTCCTCGATACCACAAAGAGAAAGAAGGGAATGGAATATACTGTATTGAAGCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACATTCGTGGCCAAAGTTTCCATTTACAAGAAGAGAACCATTATGGGAAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCATCACGTAGCCGACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACGCGACAACAAGGACAGACACGATGCTTTCAAAGAAATCACTAATCAATCCGCGGTGAAAGAGGAGGAAGAGAAGGAAAGAGCACAATCACAGCTAAAGAAGCTAAGAAGAAATGTGGAGGAGGAAGATGTGGTTGGCTTTGATCAGGACTCCAAGGATATCATCAAGCGACTCCTGGAAGGTGATTCAAATCGCAAAGCAGTCTCTATCATTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAACAACAGTCAGGTGAAGCAACACTTCATGTGTCGCGCGTGGGTTTATGTGTCAAACGAGTGCAGAGTTAAGGAGCTTTTGGTCAGCCTTCTTAAGCATTTGATGCCAAATTTTAAACAGCAAAGCAAAGGCAACAAAAAAGGTAAGAAAAGGGATGGAGACATTAACAGCCTGAGTGAGGAGGAGCTGAAGGAACAGGTGCGGAGCTGCTTGGAGAGGAAAAGATATCTTGTGATAGTAGATGATTTGTGGAAAAGGCAAGATTGGGACGAGGTGCAAGACGCTTTTCCGGATAACAACGGAGGGAGCAGAATATTGATCACTAGTCGTTTGAAAGAAGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTCCTAAATAATGAAGAAAGTTGGGAGTTGTTTCGAAGGAAAGTGTTTAGGGGTGAAGACTATCCTTCTGATTTGGAGCCTTTGGGAAAACAGATGGTTCAAAGTTGTCGTGGTTTGCCACTCTCCATCATTGTCTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCACGTAGAGAATGGTCTAAAGTGGTGGGTCATGTTAATTGGTATCTTACCCAAGATGAGACCCAAGTGAAGGATATAGTTCTGAAACTCAGCTATGACAACTTGCCAAGGAGATTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGACTTTGAAATCCCTGTTACGCCATTATTACAAAAATGGGTTGCGGAGGGTTTTATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATTGATCGCAGTTTGGTTCAAATAGCAAGATTGGAGAGTAATGCAGATGTAAAGATATGTCAGGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGCTTTTGAAGTTTGCACAGACAATAACATTCTAGTCCCGACAAAACCTCGCAGGCTGTCCATTCACAGTAAGATGGATCACTACATTTCTTCAAGCAACAATGACCATTCATGTATCCGTTCTCTGTTCTTCTTTGGCCCAGATTACGATGTTCATAAGAGGGAGTGGAAATGGCTTTTGAAAGACTTCAAACTCGTTCGAGTGTTAGAGCTCGCACCAAAAAGCCGTGGAAAGATCCCTTCTAACATCGGGAACTTTATGCATTTAAAGTACTTGAGAATAGACTCACAGTATATCACATTTGTTCCAGATTCAATACTTCACCTTTGGTCTCTACAAACCATAGACCTTGGCCCTTGGAGTCGGAACGTTTCAATTTCTTTTCCTGTCCAAGTGTGGAAACTCAAACATTTAAGACATTTGAGTACACGGGGGCCTATTAAGTTGCGAGGCAGTTGTTTGGGATCATGTGAGAAGATGTGCAATTTACAAACTATCTCTCCCCTTGTACTCAATAAACAAGCAACATCTCTGATAGAGAAAGGGACATTCCCCAATATTAAGAGAATAGGGTTGAGCGTGGTTTTTGGTAAAGGTCAATTATCCAAACTGTTGCAGAGCTTACAACTTTTAAGGTATTTGAATGAGTTCGTGATCGTCCTCCGAGATAAAGTTTATGGCAATTTCGTAACAGTCCATGAGGGTGTGGAAAGGAAGAATGGTTGTAAGCCGCAAGAACTATTTCAAAGTCTAGGGCAATTTAATTGTCTAACTGTCTTAGAGATTAATAACGTTATAGACCTTCTAACTTGTGCACTCACACTTCCTTCAAACGTTACAGAGTTAAAATTGGCAGGAATTCGCTGCATTAGTGACGAGGGGATGAAGGGTTTGGGAAATCACGCCAGACTCAAAATTTTGAGGCTTTTTGGATTTATGATTTTTTCGACTCTGAATTCCTATGACCTTACTTGTGTTGGAGGCAGCTTCCCACAACTAGAAGTATTTCAAATGGAATTTTTGAAAATTGAAAAGTGGAATTTAGGCAAAGGTGCAATGCCAAAACTTCAAAGTCTGGTGATAAACTTTTGTGGAAGGTTAGATGATCTCCCAAATGAACTCTGGTCATTGAGTGACTTGAAAAAAGTACATGTAACGAAACCCTCGAGACAAATGATTGGCGTCTTACAAAATTTGGAAATCAACAATGCAGTTCAACTCGTCACAGAAGATCTTCCACCTTGGATGGATGAGACGGATTGGGAAGTTTTCGAGTATTTGATGGAAGGCTAA 2835 0.4215 MADSVVTFVLDHLAQLAAREANLLYGVEDRVQSLQYELELIKELLDTTKRKKGMEYTVLKQIRDVAHLAEDVIDTFVAKVSIYKKRTIMGRMLRGFGQARLLHHVADKIDKLKTTLNEIRDNKDRHDAFKEITNQSAVKEEEEKERAQSQLKKLRRNVEEEDVVGFDQDSKDIIKRLLEGDSNRKAVSIIGMGGLGKTTLARKVYNNSQVKQHFMCRAWVYVSNECRVKELLVSLLKHLMPNFKQQSKGNKKGKKRDGDINSLSEEELKEQVRSCLERKRYLVIVDDLWKRQDWDEVQDAFPDNNGGSRILITSRLKEVALHAGDDVPHYLQFLNNEESWELFRRKVFRGEDYPSDLEPLGKQMVQSCRGLPLSIIVLAGLLANKEKSRREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQIARLESNADVKICQVHDLLRDLCISESKEDKAFEVCTDNNILVPTKPRRLSIHSKMDHYISSSNNDHSCIRSLFFFGPDYDVHKREWKWLLKDFKLVRVLELAPKSRGKIPSNIGNFMHLKYLRIDSQYITFVPDSILHLWSLQTIDLGPWSRNVSISFPVQVWKLKHLRHLSTRGPIKLRGSCLGSCEKMCNLQTISPLVLNKQATSLIEKGTFPNIKRIGLSVVFGKGQLSKLLQSLQLLRYLNEFVIVLRDKVYGNFVTVHEGVERKNGCKPQELFQSLGQFNCLTVLEINNVIDLLTCALTLPSNVTELKLAGIRCISDEGMKGLGNHARLKILRLFGFMIFSTLNSYDLTCVGGSFPQLEVFQMEFLKIEKWNLGKGAMPKLQSLVINFCGRLDDLPNELWSLSDLKKVHVTKPSRQMIGVLQNLEINNAVQLVTEDLPPWMDETDWEVFEYLMEG 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8122g00001 944 Gene3D - 144 327 IPR027417 -
Vium8122g00001 944 CDD RX-CC_like 2 121 IPR038005 -
Vium8122g00001 944 Gene3D Ribonuclease Inhibitor 519 930 IPR032675 -
Vium8122g00001 944 FunFam Probable disease resistance protein At1g63360 419 508 - -
Vium8122g00001 944 SUPERFAMILY L domain-like 497 901 - -
Vium8122g00001 944 FunFam Probable disease resistance protein At5g66910 333 420 - -
Vium8122g00001 944 PRINTS Disease resistance protein signature 275 289 - -
Vium8122g00001 944 PRINTS Disease resistance protein signature 368 382 - -
Vium8122g00001 944 PRINTS Disease resistance protein signature 186 201 - -
Vium8122g00001 944 PRINTS Disease resistance protein signature 865 881 - -
Vium8122g00001 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 433 IPR027417 -
Vium8122g00001 944 Gene3D - 5 99 - -
Vium8122g00001 944 Coils Coil 130 164 - -
Vium8122g00001 944 Gene3D - 419 509 IPR036388 -
Vium8122g00001 944 FunFam Probable disease resistance protein At1g61300 145 328 - -
Vium8122g00001 944 Gene3D - 333 418 IPR042197 -
Vium8122g00001 944 Pfam NB-ARC domain 169 421 IPR002182 GO:0043531
Vium8122g00001 944 Pfam Rx N-terminal domain 5 81 IPR041118 -
Vium8122g00001 944 Coils Coil 31 51 - -
Vium8122g00001 944 Coils Coil 102 122 - -
Vium8122g00001 944 PANTHER DISEASE RESISTANCE PROTEIN RP 42 862 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8122g00001 Vium-Chr8122 9245 12526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8122g00001 128 399 WRKY Transcription Factor Family AT4G12020 25.704 4.15e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8122g00001 - - vra:106779070 1280.77