Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8112g00013 ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGGTCCACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATCCACCAGTGTCACAATGGCCACACACTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCTCATTTAAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGNATTCAATGTACCCTCCAATCCACCAGTGTCACAATGGCCACACACTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCTCATTTAAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATCTGGGAGGGTACGCCACGGAGTGTTCGAGATAGCCACCGTAAAGTGAGGGATAGCCACGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCTGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 1482 0.4521 MDLESVECVSSSDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMXSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8112g00013 493 MobiDBLite consensus disorder prediction 14 31 - -
Vium8112g00013 493 MobiDBLite consensus disorder prediction 8 46 - -
Vium8112g00013 493 SUPERFAMILY TRAF domain-like 284 476 - -
Vium8112g00013 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 114 IPR013083 -
Vium8112g00013 493 CDD RING-HC_SIAHs 60 98 - -
Vium8112g00013 493 CDD RING-HC_SIAHs 235 267 - -
Vium8112g00013 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Vium8112g00013 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 338 IPR013083 -
Vium8112g00013 493 SUPERFAMILY TRAF domain-like 115 249 - -
Vium8112g00013 493 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 237 478 - -
Vium8112g00013 493 FunFam E3 ubiquitin-protein ligase SINAT5-like 340 472 - -
Vium8112g00013 493 Pfam Seven in absentia protein family 273 472 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium8112g00013 493 Pfam Seven in absentia protein family 104 236 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium8112g00013 493 SUPERFAMILY RING/U-box 53 101 - -
Vium8112g00013 493 ProSiteProfiles Zinc finger SIAH-type profile. 284 344 IPR013010 GO:0008270
Vium8112g00013 493 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 239 IPR008974 GO:0005515
Vium8112g00013 493 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 339 472 IPR008974 GO:0005515
Vium8112g00013 493 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Vium8112g00013 493 FunFam E3 ubiquitin-protein ligase SINAT3 281 339 - -
Vium8112g00013 493 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Vium8112g00013 493 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Vium8112g00013 493 MobiDBLite consensus disorder prediction 32 46 - -
Vium8112g00013 493 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Vium8112g00013 493 CDD Sina 345 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8112g00013 Vium-Chr8112 103881 110638 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8112g00013 238 479 C3H Transcription Factor Family AT2G41980 81.818 4.25e-151 431