Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8112g00011 ATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATCTGGGAGGGTACGCCACGGAGTGTTCGAGATAGCCACCGTAAAGTGAGGGATAGCCACGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCTGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 306 0.4608 MAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8112g00011 101 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 80 IPR008974 GO:0005515
Vium8112g00011 101 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 86 - -
Vium8112g00011 101 SUPERFAMILY TRAF domain-like 2 84 - -
Vium8112g00011 101 Pfam Seven in absentia protein family 2 80 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8112g00011 Vium-Chr8112 99176 99481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8112g00011 1 87 C3H Transcription Factor Family AT2G41980 80.460 3.34e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8112g00011 K04506 - vum:124846349 211.075