Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8111g00005 ATGGGGACTCCGGAATTTCCAAATCTCGGCAACCATTGTTCTGTTTCCGATTGCAGGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTGATCAGATATATTGTTTGGAGCACCGAGGTTATATTGAGCACAAGTGCACAAAGCCCAACAAAGAAGATGTCAAAGTTGTCATATGTCCCCTTTGCGCAAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATGGCTTGGGACCATCATGTTAACATTGATTGTGATCCATCAAATTACGAAAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTATTGGTATTCTCCAACACCATCAAGTGCAGGGATTGCCTGGAAGACCATTGTTTGAAGCACCGGTTTGGCCCTGATCACAAATGTTCTGGTCCCAAAAAATTAGAGACAAGTTTTTCATTCATGAGTTTATTTAATACGATTAAAAAAGAGGAGCCAAAGCCCACTTTAACTTCGACGGCATCATCTAAGTGGACTTCAAGCTTTCTCAGCGTGGCTTCTAACATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCATGTTTGGCTGGCAGCAAGGGATAGTGCGGGACCGAACAGTGGCAGTGGAAATAAAAATGACCTTCAAGAGGAATCTTGCACTCAATGTGGTGTAAAGTTTTCCTCTGCCATTTCTTTGGTGGATCATGTGCAACAAGTTCATGAAAGCAATGGGAAACCAGTAGGGGTTAAGAAGATTGAGGCATGCCCCAAGTGTAGTGGAGGGTTTGTTGACCCGGTATCCCTAGTGGAGCATGTTGAGAGAGATCATGGTGGTGGTTCTGGGGCATAG 873 0.449 MGTPEFPNLGNHCSVSDCRQLDFLPFTCDRCDQIYCLEHRGYIEHKCTKPNKEDVKVVICPLCAKGVRLIPDQDPNMAWDHHVNIDCDPSNYEKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGPDHKCSGPKKLETSFSFMSLFNTIKKEEPKPTLTSTASSKWTSSFLSVASNIRASAEASMSKLSNEINHVWLAARDSAGPNSGSGNKNDLQEESCTQCGVKFSSAISLVDHVQQVHESNGKPVGVKKIEACPKCSGGFVDPVSLVEHVERDHGGGSGA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8111g00005 290 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Vium8111g00005 290 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Vium8111g00005 290 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vium8111g00005 290 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Vium8111g00005 290 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Vium8111g00005 290 SMART c2h2final6 261 284 IPR013087 -
Vium8111g00005 290 SMART c2h2final6 225 248 IPR013087 -
Vium8111g00005 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Vium8111g00005 290 Gene3D - 2 65 IPR035896 -
Vium8111g00005 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Vium8111g00005 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Vium8111g00005 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vium8111g00005 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vium8111g00005 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vium8111g00005 290 Gene3D - 82 149 IPR035896 -
Vium8111g00005 290 Gene3D Classic Zinc Finger 188 287 - -
Vium8111g00005 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vium8111g00005 290 Pfam zinc-finger C2H2-type 227 248 IPR041697 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8111g00005 Vium-Chr8111 32204 34041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8111g00005 1 290 C2H2 Transcription Factor Family AT2G41835 55.631 1.50e-105 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8111g00005 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8111g00005 - - gmx:100806459 512.686