Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8108g00001 ATGAGACATACGCGGCACGCCGAGACACAGAGACAAATAAAAGAAGCAGTGGTTCGATTATTTCCCTTTTATCTATTGGGTTCTCTCAGCCCCTTTCTTAGCGCTCACAAACTCAACACCATGATGTGGGAATGGGGCGATTACGAAGACGCCATCCCAGAATCCGACCAACCCGAACCCGATTCTCATCTCAACTTCGATTTCTTCTCCACCCTCGCCAAACCCAAGGATTATTATAAGATACTGGAAGTGGATTATGATGCTACGGATGATGATATTCGCTCCAATTACATTCGTCTTGCTCTGAAGTGGCACCCTGACAAGCAGAAAGACCAGGATTGTACTACCTCGCGATTCCAAGACATAAACGAGGCCTACCAGGTTTTGAGTGATCCAGTCAAAAGGAGGGAATATGACATAAACGGAATGCGTTATGAATATGATTACAATATCATTGATTATCTTAATCGTTACAAGGGCCTTATCTTGACTTGCAATGGCCTTGGCATAAAGCATTCGATATGGTAA 528 0.4394 MRHTRHAETQRQIKEAVVRLFPFYLLGSLSPFLSAHKLNTMMWEWGDYEDAIPESDQPEPDSHLNFDFFSTLAKPKDYYKILEVDYDATDDDIRSNYIRLALKWHPDKQKDQDCTTSRFQDINEAYQVLSDPVKRREYDINGMRYEYDYNIIDYLNRYKGLILTCNGLGIKHSIW 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8108g00001 175 ProSiteProfiles dnaJ domain profile. 77 142 IPR001623 -
Vium8108g00001 175 SMART dnaj_3 76 134 IPR001623 -
Vium8108g00001 175 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Vium8108g00001 175 FunFam Chaperone protein DNAj, putative 69 156 - -
Vium8108g00001 175 Pfam DnaJ domain 77 139 IPR001623 -
Vium8108g00001 175 SUPERFAMILY Chaperone J-domain 72 160 IPR036869 -
Vium8108g00001 175 CDD DnaJ 77 131 IPR001623 -
Vium8108g00001 175 PRINTS DnaJ domain signature 97 112 IPR001623 -
Vium8108g00001 175 PRINTS DnaJ domain signature 114 134 IPR001623 -
Vium8108g00001 175 PRINTS DnaJ domain signature 79 97 IPR001623 -
Vium8108g00001 175 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 42 175 - -
Vium8108g00001 175 Gene3D DnaJ domain 69 154 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8108g00001 Vium-Chr8108 12019 24049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8108g00001 70 139 C2H2 Transcription Factor Family AT1G74250 38.667 2.46e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8108g00001 - - var:108338470 372.859