Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8107g00001 ATGGCTACTTATGCCACCACCGCCACCGCCACCGCCACCACCTTGTTTCTCATCCTTGGAATGGCCACCACCACCCTTTGCCTCCAAGAAAAGGGTGTCCTCCAAATGGCTCAGAATCATGTTTCTCAAGCCAAAAACTGGGTTGCAAACGCTTTGACATTGCATGGCTTTGAAAGCCTAAGCCTAAGCTTTTCTGATCACCAAACAAGTGTTATAGCCCTCAGAGACTGTTCCAAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGATGTCTCAGAACAACACTTACACCAGAGAAGATGCACTCACATGGATAAGTGCTGTGATGACGAATCACAGGACCTGTTTGGATGGTCTGCAAGAAAAAGGGTATCTTGAAGCTCAGATTCTGGATAGAAACCTGACCATGTCGCTTAAACAAGCTCTTATTTTGTATTCAAGAAATAAAGTCATAGCCAAAGGACCACCACTTCAGGGAACAATATCCAAAGGTTCTGGTATTTTAGAATCATGGAGTGAAGCAAGCTATAAGCCAGATTTCACAGTGGCTCAGGATGGTTCAGGGACACACAGAACAATCCAAGAAGCAGTGAATGCACTTTCTGCAATGGGAAATAACCGTCCTGCAAGAGCAATCATATACGTAAAATCAGGGGTCTATAACGAGAAGGTGAATATTGGACAGAAACTGCATAATGTGATGTTTGTAGGAGATGGCATAGACAGAACTGTTGTTACTGGGAACAGAAATGTAGTTCAAGGATCCACCACTCTGAGCTCAGCTACATTTGATGTATCAGGAGATGGATTTTGGGCTAGAGACATGACATTTGAGAACAGTGCAGGTCCAGAAAAGCACCAAGCAGTGGCACTGAAGGTTAGTTCAGACTTATCAGTGTTCTACAGGTGCAGCTTCAAGGGCTACCAAGATACTCTTTACGTGCTCTCGAACCGCCAATTCTACCGTGACTGTGAAATCTACGGCACCGTAGATTTCATATTCGGGGATGCTGCAGTGGTGCTACAGAACTGTGACATCTTAGTGAGGAAGCCGTTGAGCCAGCAATCGAATTTTATAACAGCACAAGGAAGAGATGACCCTAACAAGAACACAGGGATTGCAATGCAAAGTTGCAGAGTTAGAGCAGCATCAGATTTTGCCAGCCTTAAGAATTCCCAGAAGACATTCCTGGGAAGGCCATGGAGGAAGTACTCAAGGACCGTGTTCATGAAGAGTGAGTTGGATGAAATGATTGAGCCAAAAGGGTGGGGTGAATGGAGTGGAAGTTTTGCACTTTCAACCTTGTTCTATGGAGAGTATATGAACACAGGAGGTGGTGCTTCTACAGCAAATAGAGTCAGATGGCCTGGTTTTCATGTGCTGAGCAGTGCTACTGAGGCATCACCTTTCACAGTGAGACAGTTTGTGCAAGGAGAAAGGTGGATTCCTGCTACAGGGGTGCCATACTCTTCTGGAATATGA 1488 0.4536 MATYATTATATATTLFLILGMATTTLCLQEKGVLQMAQNHVSQAKNWVANALTLHGFESLSLSFSDHQTSVIALRDCSKLYEESESRLSHMMSQNNTYTREDALTWISAVMTNHRTCLDGLQEKGYLEAQILDRNLTMSLKQALILYSRNKVIAKGPPLQGTISKGSGILESWSEASYKPDFTVAQDGSGTHRTIQEAVNALSAMGNNRPARAIIYVKSGVYNEKVNIGQKLHNVMFVGDGIDRTVVTGNRNVVQGSTTLSSATFDVSGDGFWARDMTFENSAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVLSNRQFYRDCEIYGTVDFIFGDAAVVLQNCDILVRKPLSQQSNFITAQGRDDPNKNTGIAMQSCRVRAASDFASLKNSQKTFLGRPWRKYSRTVFMKSELDEMIEPKGWGEWSGSFALSTLFYGEYMNTGGGASTANRVRWPGFHVLSSATEASPFTVRQFVQGERWIPATGVPYSSGI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8107g00001 495 PANTHER PECTINESTERASE 40 485 - -
Vium8107g00001 495 ProSitePatterns Pectinesterase signature 2. 328 337 IPR033131 -
Vium8107g00001 495 SMART PMEI_2 32 146 IPR006501 GO:0004857
Vium8107g00001 495 FunFam Pectinesterase 175 495 - -
Vium8107g00001 495 Pfam Pectinesterase 181 481 IPR000070 GO:0030599|GO:0042545
Vium8107g00001 495 Gene3D - 175 495 IPR012334 -
Vium8107g00001 495 Pfam Plant invertase/pectin methylesterase inhibitor 38 128 IPR006501 GO:0004857
Vium8107g00001 495 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 148 IPR035513 -
Vium8107g00001 495 SUPERFAMILY Pectin lyase-like 179 494 IPR011050 -
Vium8107g00001 495 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 138 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8107g00001 Vium-Chr8107 1714 5286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8107g00001 1 495 Carbohydrate Esterase AT3G60730 51.527 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8107g00001 K01051 - gmx:100792852 790.03